Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MIR1185-2-201ENST00000408687 86 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 RNU6-57P-201ENST00000411348 103 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 SRIP3-201ENST00000413200 219 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 AC093259.1-201ENST00000509755 300 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 RNU2-27P-201ENST00000516185 142 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 Y_RNA.668-201ENST00000516233 93 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
TRAIPQ9BWF2 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 RNU1-91P-201ENST00000364746 163 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 RNU6-472P-201ENST00000384299 107 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 MIR483-201ENST00000385070 76 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 RNA5SP120-201ENST00000410900 112 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 AC009963.1-201ENST00000417265 157 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 AC008134.1-201ENST00000420943 193 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 AC005326.1-201ENST00000429197 123 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 SUMO1P2-201ENST00000452524 304 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 RNU6-1132P-201ENST00000459214 107 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 RN7SL283P-201ENST00000489055 303 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 HMGB3P17-201ENST00000504195 649 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 SNORA70.24-201ENST00000517233 118 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 DEFB108E-201ENST00000524692 240 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 YPEL5P2-201ENST00000605553 359 ntBASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.82□□□□□ -1.8
TRAIPQ9BWF2 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 Y_RNA.101-201ENST00000363154 102 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RNA5SP42-201ENST00000364278 115 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RNU6-418P-201ENST00000384035 107 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RNU6-1235P-201ENST00000384559 107 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 MIR592-201ENST00000384959 97 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 SNORD127-201ENST00000458892 86 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RNU6-498P-201ENST00000459468 107 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RPL39P38-201ENST00000467018 153 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RNU6-1338P-201ENST00000516328 91 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 SNORA74D-201ENST00000516404 141 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 RNU2-31P-201ENST00000516954 155 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 AC055872.1-201ENST00000570978 278 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 MIR3126-201ENST00000577443 74 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 MIR3200-201ENST00000580767 85 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 AL590240.4-201ENST00000616908 390 ntBASIC3.81□□□□□ -1.8
TRAIPQ9BWF2 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC245060.5-201ENST00000610778 3293 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 SNORA25.1-201ENST00000362326 128 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 SNORD14D-201ENST00000384390 87 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 Y_RNA.489-201ENST00000384410 101 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 RNU6-102P-201ENST00000384485 104 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 Y_RNA.541-201ENST00000384640 113 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 EDDM3CP-201ENST00000415977 425 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC017079.2-201ENST00000416102 485 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 HSPE1P25-201ENST00000455484 251 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC025518.1-201ENST00000479856 347 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC018868.1-201ENST00000491307 315 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 SCARNA24.2-201ENST00000516968 130 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 RNU6-1271P-201ENST00000517049 105 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 IGKV2-26-201ENST00000518305 343 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 NDUFA5P6-201ENST00000542110 379 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC110588.1-201ENST00000559699 137 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 MIR4425-201ENST00000580572 84 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 MIR3651-201ENST00000630427 90 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 AC135776.4-201ENST00000624300 1904 ntBASIC3.8□□□□□ -1.8
TRAIPQ9BWF2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 MIR335-201ENST00000362173 94 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 Y_RNA.332-201ENST00000365271 113 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 RNU6-326P-201ENST00000365480 107 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 Y_RNA.383-201ENST00000383855 97 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 RNU6-1248P-201ENST00000391096 64 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.79□□□□□ -1.8
TRAIPQ9BWF2 AC016717.1-201ENST00000448918 286 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms