Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 RNU6-873P-201ENST00000363833 107 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 SNORD115-8-201ENST00000363856 82 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 RNU6-944P-201ENST00000364023 107 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 SNORD115-38-201ENST00000365037 82 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 CBX3P6-201ENST00000430257 527 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 CHEK2P4-201ENST00000450340 246 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AC026436.1-201ENST00000510537 270 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 RNA5SP76-201ENST00000516277 87 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 RN7SKP40-201ENST00000517211 242 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AC021269.2-201ENST00000532318 330 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AC026470.2-201ENST00000561492 181 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 MIR5006-201ENST00000583027 110 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 SNORD58B-201ENST00000607313 66 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 AC005562.2-201ENST00000618264 111 ntBASIC2.59□□□□□ -1.99
PAAF1Q9BRP4 BX322639.1-202ENST00000423987 2213 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC007336.1-201ENST00000576365 3828 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNA5SP125-201ENST00000364843 120 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 SNORD14.1-201ENST00000365609 90 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 U8.9-201ENST00000365667 134 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 SNORA18.2-201ENST00000383865 132 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 Y_RNA.389-201ENST00000383924 113 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 MIR10B-201ENST00000385011 110 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNU1-139P-201ENST00000391307 165 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RPL21P75-201ENST00000396599 483 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RPL21P28-201ENST00000401418 483 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RN7SKP123-201ENST00000410732 291 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC104389.3-201ENST00000445629 235 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 MTCO3P8-201ENST00000453691 755 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 U8.22-201ENST00000459141 133 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RPL21P39-201ENST00000463605 483 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC087190.1-201ENST00000484462 480 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC107032.1-201ENST00000485945 480 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC132942.1-201ENST00000486753 483 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC093591.1-201ENST00000491435 481 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RPL21P16-201ENST00000495531 483 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNU6-475P-201ENST00000516073 104 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNU6-911P-201ENST00000516523 104 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 SNORA40.14-201ENST00000516543 86 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNU5F-4P-201ENST00000516581 114 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNU6-965P-201ENST00000516721 96 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 RNU2-44P-201ENST00000516795 194 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC093023.1-201ENST00000547375 507 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 MIR5092-201ENST00000583139 88 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 MIR5188-201ENST00000583467 113 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 AC138305.3-201ENST00000624988 240 ntBASIC2.58□□□□□ -2
PAAF1Q9BRP4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
PAAF1Q9BRP4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.57□□□□□ -2
PAAF1Q9BRP4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PAAF1Q9BRP4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
PAAF1Q9BRP4 Y_RNA.158-201ENST00000363651 101 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 RNU6-26P-201ENST00000383985 107 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 RNU6-546P-201ENST00000383991 107 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 Y_RNA.526-201ENST00000384572 110 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 MIR606-201ENST00000384851 96 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 RNU6-101P-201ENST00000410323 104 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 RNU2-32P-201ENST00000411193 191 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 AC004386.2-201ENST00000441858 148 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 AC096638.1-201ENST00000444678 216 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 AL118496.2-201ENST00000448300 230 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 MIR449C-201ENST00000516047 92 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 SCARNA15.1-201ENST00000516384 125 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 RNA5SP281-201ENST00000516504 135 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.57□□□□□ -2
PAAF1Q9BRP4 AP002770.2-201ENST00000543613 532 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.57□□□□□ -2
PAAF1Q9BRP4 AC010999.1-201ENST00000611856 324 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 TCL6_2.1-201ENST00000615162 119 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.57□□□□□ -2
PAAF1Q9BRP4 MIR1291-201ENST00000627649 87 ntBASIC2.57□□□□□ -2
PAAF1Q9BRP4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.56□□□□□ -2
PAAF1Q9BRP4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
PAAF1Q9BRP4 U8.2-201ENST00000363156 134 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 Y_RNA.162-201ENST00000363683 102 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 Y_RNA.179-201ENST00000363844 90 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 RNU6-245P-201ENST00000384020 107 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 SNORA51.11-201ENST00000384442 131 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 MIR592-201ENST00000384959 97 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 MIR561-201ENST00000385216 97 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC003685.2-201ENST00000422795 395 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 EIF1P2-201ENST00000428233 350 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 RPS23P5-201ENST00000495419 428 ntBASIC2.56□□□□□ -2
PAAF1Q9BRP4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.56□□□□□ -2
PAAF1Q9BRP4 Y_RNA.721-201ENST00000517207 102 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms