Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.74□□□□□ -2.13
SSX3Q99909 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.74□□□□□ -2.13
SSX3Q99909 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.74□□□□□ -2.13
SSX3Q99909 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.74□□□□□ -2.13
SSX3Q99909 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.74□□□□□ -2.13
SSX3Q99909 MIR4790-201ENST00000577799 79 ntBASIC1.74□□□□□ -2.13
SSX3Q99909 AC104984.5-201ENST00000586878 94 ntBASIC1.74□□□□□ -2.13
SSX3Q99909 AC060780.3-201ENST00000589464 80 ntBASIC1.74□□□□□ -2.13
SSX3Q99909 SNRPGP20-201ENST00000604477 205 ntBASIC1.74□□□□□ -2.13
SSX3Q99909 AC084782.3-201ENST00000612282 578 ntBASIC1.74□□□□□ -2.13
SSX3Q99909 MIR6128-201ENST00000615528 109 ntBASIC1.74□□□□□ -2.13
SSX3Q99909 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.73□□□□□ -2.13
SSX3Q99909 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.73□□□□□ -2.13
SSX3Q99909 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SSX3Q99909 SNORA64-201ENST00000384674 134 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 MIR32-201ENST00000384965 70 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 SNORA48.1-201ENST00000390879 135 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 MIR300-201ENST00000401138 83 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.73□□□□□ -2.13
SSX3Q99909 MTCO3P8-201ENST00000453691 755 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 FO393415.2-201ENST00000480085 343 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.73□□□□□ -2.13
SSX3Q99909 Y_RNA.682-201ENST00000516457 100 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.73□□□□□ -2.13
SSX3Q99909 MIR4273-201ENST00000582824 84 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 MIR5002-201ENST00000584713 97 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 7SK.7-201ENST00000603504 247 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 AL359697.1-201ENST00000624879 587 ntBASIC1.73□□□□□ -2.13
SSX3Q99909 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.73□□□□□ -2.13
SSX3Q99909 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SSX3Q99909 MTND4P5-201ENST00000435821 1374 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
SSX3Q99909 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SSX3Q99909 AL356292.1-201ENST00000283110 373 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 CBX3P1-201ENST00000325243 554 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 MIR340-201ENST00000362125 95 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 SNORA67.3-201ENST00000384366 140 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 MIR487A-201ENST00000385009 80 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SSX3Q99909 MIR1283-1-201ENST00000408494 87 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 Y_RNA.599-201ENST00000410489 109 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 RPL30P16-201ENST00000419341 429 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AL445685.2-201ENST00000422551 342 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 Z82188.1-201ENST00000436709 154 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.72□□□□□ -2.13
SSX3Q99909 snoU13.15-201ENST00000459407 104 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AC018710.1-201ENST00000506509 158 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.72□□□□□ -2.13
SSX3Q99909 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.72□□□□□ -2.13
SSX3Q99909 MIR4742-201ENST00000581069 85 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 MIR4753-201ENST00000585119 83 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AC010928.2-201ENST00000588017 287 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AC005786.1-201ENST00000588553 154 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 AC011712.1-201ENST00000588959 234 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.72□□□□□ -2.13
SSX3Q99909 AC122108.2-201ENST00000611946 526 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 MIR6715A-201ENST00000615929 79 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.72□□□□□ -2.13
SSX3Q99909 ZNF204P-201ENST00000416749 2397 ntBASIC1.72□□□□□ -2.13
SSX3Q99909 U8.10-201ENST00000384260 133 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 AL023284.1-201ENST00000403956 276 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 AL356776.1-201ENST00000406574 447 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 RNA5SP100-201ENST00000410903 110 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 RNA5SP59-201ENST00000410922 110 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.71□□□□□ -2.14
SSX3Q99909 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SSX3Q99909 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.71□□□□□ -2.14
SSX3Q99909 AC009237.7-201ENST00000447357 229 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.71□□□□□ -2.14
SSX3Q99909 snoU13.30-201ENST00000458951 104 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 AC010531.2-201ENST00000465012 153 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.71□□□□□ -2.14
SSX3Q99909 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.71□□□□□ -2.14
SSX3Q99909 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.71□□□□□ -2.14
SSX3Q99909 RNA5SP54-201ENST00000516951 92 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.71□□□□□ -2.14
SSX3Q99909 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.71□□□□□ -2.14
SSX3Q99909 BX322639.1-202ENST00000423987 2213 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SSX3Q99909 Y_RNA.72-201ENST00000362894 103 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 SNORD115-32-201ENST00000364079 82 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 RNU6-596P-201ENST00000365395 98 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.7□□□□□ -2.14
SSX3Q99909 MIR153-2-201ENST00000385225 87 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 MTND3P8-201ENST00000412909 339 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.7□□□□□ -2.14
SSX3Q99909 MTCO1P44-201ENST00000441935 243 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 HMGN2P23-201ENST00000456759 269 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 AC116337.1-201ENST00000509680 687 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 RNU6-1198P-201ENST00000516904 67 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 SUMO2P18-201ENST00000518873 252 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 RRN3P3-201ENST00000549207 578 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.7□□□□□ -2.14
SSX3Q99909 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.7□□□□□ -2.14
SSX3Q99909 MIR5696-201ENST00000578474 85 ntBASIC1.7□□□□□ -2.14
SSX3Q99909 AC083806.3-201ENST00000614016 455 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms