Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 MIR561-201ENST00000385216 97 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 RNU6-159P-201ENST00000391080 106 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 AL590004.1-201ENST00000405321 300 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 AC004386.2-201ENST00000441858 148 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 TRBV12-1-201ENST00000479785 344 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 AC107032.1-201ENST00000485945 480 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.94□□□□□ -1.94
NUP88Q99567 HSPE1P20-201ENST00000538133 289 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 AL356575.1-201ENST00000603008 283 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 MIR4272-201ENST00000635924 64 ntBASIC2.94□□□□□ -1.94
NUP88Q99567 Y_RNA.80-201ENST00000362996 102 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 Y_RNA.148-201ENST00000363557 117 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 RNU6-137P-201ENST00000363680 108 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 Y_RNA.485-201ENST00000384395 102 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 MIR10B-201ENST00000385011 110 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 MTCYBP6-201ENST00000441810 138 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 U8.22-201ENST00000459141 133 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 AC007215.1-201ENST00000464893 276 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.93□□□□□ -1.94
NUP88Q99567 RPPH1-2P-201ENST00000516688 293 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.93□□□□□ -1.94
NUP88Q99567 AC093023.1-201ENST00000547375 507 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 ANP32BP3-201ENST00000559213 706 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.93□□□□□ -1.94
NUP88Q99567 VN1R91P-201ENST00000594377 169 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 AL353621.2-201ENST00000605340 133 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 AC091925.1-201ENST00000623204 462 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 BX322639.1-202ENST00000423987 2213 ntBASIC2.93□□□□□ -1.94
NUP88Q99567 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.92□□□□□ -1.94
NUP88Q99567 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
NUP88Q99567 MTND4P1-201ENST00000457501 1466 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NUP88Q99567 Y_RNA.424-201ENST00000384063 103 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 RNU6-1026P-201ENST00000384465 108 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 RNU1-139P-201ENST00000391307 165 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.92□□□□□ -1.94
NUP88Q99567 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.92□□□□□ -1.94
NUP88Q99567 MTCO3P8-201ENST00000453691 755 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 AC132942.1-201ENST00000486753 483 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 RPS23P5-201ENST00000495419 428 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 RNU4-77P-201ENST00000516692 156 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 RNU2-44P-201ENST00000516795 194 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
NUP88Q99567 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.92□□□□□ -1.94
NUP88Q99567 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.92□□□□□ -1.94
NUP88Q99567 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.92□□□□□ -1.94
NUP88Q99567 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
NUP88Q99567 TCL6_2.1-201ENST00000615162 119 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 MIR6715A-201ENST00000615929 79 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 U4.3-201ENST00000621047 82 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 AC005592.1-201ENST00000566527 1640 ntBASIC2.92□□□□□ -1.94
NUP88Q99567 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.92□□□□□ -1.94
NUP88Q99567 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
NUP88Q99567 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
NUP88Q99567 MIR95-201ENST00000385072 81 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
NUP88Q99567 RNA5SP492-201ENST00000411330 114 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 MTCO3P19-201ENST00000415864 321 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 Z82209.1-201ENST00000422141 2135 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.91□□□□□ -1.94
NUP88Q99567 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.91□□□□□ -1.94
NUP88Q99567 AC009238.1-201ENST00000442165 424 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 AC009237.6-201ENST00000446969 424 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 MIR2355-201ENST00000517199 87 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.91□□□□□ -1.94
NUP88Q99567 AC022616.8-201ENST00000533569 253 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 GNAI2P1-201ENST00000541815 315 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 AC004486.1-201ENST00000546846 233 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 SNORD53-201ENST00000579969 78 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.91□□□□□ -1.94
NUP88Q99567 AC007742.2-201ENST00000618226 398 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 AL590808.1-201ENST00000618696 141 ntBASIC2.91□□□□□ -1.94
NUP88Q99567 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NUP88Q99567 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.91□□□□□ -1.94
NUP88Q99567 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.9□□□□□ -1.95
NUP88Q99567 RNU6-727P-201ENST00000363592 107 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 AC117470.1-201ENST00000381974 330 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 RNU6-245P-201ENST00000384020 107 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 RPL19P1-201ENST00000411635 428 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.9□□□□□ -1.95
NUP88Q99567 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.9□□□□□ -1.95
NUP88Q99567 AC096638.1-201ENST00000444678 216 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 CHEK2P4-201ENST00000450340 246 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 RNU7-14P-201ENST00000459331 62 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.9□□□□□ -1.95
NUP88Q99567 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.9□□□□□ -1.95
NUP88Q99567 RNU1-117P-201ENST00000517041 158 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
NUP88Q99567 MIR3670-2-201ENST00000582974 65 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 MIR3670-1-201ENST00000584160 65 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 MIR3670-3-201ENST00000584855 65 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 RPS29P30-201ENST00000600975 111 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 RPL17P51-201ENST00000605218 238 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 Y_RNA.812-201ENST00000610788 101 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.9□□□□□ -1.95
NUP88Q99567 MIR3670-4-201ENST00000612260 65 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 Y_RNA.784-201ENST00000613803 101 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 Y_RNA.787-201ENST00000616522 101 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 Y_RNA.780-201ENST00000617336 101 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms