Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPS15AP40-201ENST00000419621 391 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 HSFY7P-201ENST00000432672 318 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 HSFY8P-201ENST00000437934 318 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 HSFY5P-201ENST00000453726 309 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 MTCO3P27-201ENST00000514397 196 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 RNY4P16-201ENST00000364768 94 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.567-201ENST00000384736 106 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 MIR18B-201ENST00000454574 71 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 FGF7P1-201ENST00000582820 288 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 MIR3925-201ENST00000584674 77 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 SCARNA4-201ENST00000629045 128 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 RNU6-837P-201ENST00000391056 108 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 AL133475.1-201ENST00000404414 305 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.477-201ENST00000384352 108 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 AL356583.2-201ENST00000426536 280 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 AC023347.2-201ENST00000433994 462 ntBASIC-1.56□□□□□ -2.66
VPS13AQ96RL7 RNU6-1035P-201ENST00000384477 107 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AL353997.1-201ENST00000432936 108 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AC079140.3-201ENST00000511111 550 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.666-201ENST00000516187 112 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.135-201ENST00000363439 95 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AC022137.1-201ENST00000483735 151 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AC104383.1-201ENST00000530297 370 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 ZNF849P-201ENST00000594711 1566 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 SNORD115-28-201ENST00000363931 81 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 ERLEC1P1-201ENST00000433806 578 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 AL391813.1-201ENST00000603098 260 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 Z99289.3-201ENST00000605586 594 ntBASIC-1.57□□□□□ -2.66
VPS13AQ96RL7 MIR517B-201ENST00000385102 67 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 MTCO3P12-201ENST00000416718 547 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AC013828.2-201ENST00000532487 235 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 RBM11P1-201ENST00000604951 799 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AC007349.4-201ENST00000608114 532 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AC110792.3-201ENST00000595906 1614 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 RNU6-553P-201ENST00000364047 96 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AC245047.8-201ENST00000456455 284 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 MIR3152-201ENST00000579801 74 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 MIR6079-201ENST00000635807 62 ntBASIC-1.58□□□□□ -2.66
VPS13AQ96RL7 RNU6-819P-201ENST00000364116 107 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 RNU6-343P-201ENST00000364709 104 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 RNU6-331P-201ENST00000384724 107 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 AC113347.3-201ENST00000509113 148 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 AC107954.1-201ENST00000565906 727 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 YWHAEP3-201ENST00000582767 121 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 MIR664B-201ENST00000626756 61 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 SNORD113.3-201ENST00000364630 78 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 MIR548B-201ENST00000385247 97 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 RNU5E-9P-201ENST00000411164 104 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 RPL39P34-201ENST00000477141 156 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 TRBV8-1-201ENST00000481590 279 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 IL7-206ENST00000520269 456 ntTSL 3 BASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 MIR6507-201ENST00000613630 70 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 RNU6-270P-201ENST00000364131 105 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 MIR548K-201ENST00000408406 116 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 MIR1827-201ENST00000408549 66 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 Z77249.1-201ENST00000444622 1175 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 SNORA18.7-201ENST00000516910 131 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 AC080078.2-201ENST00000603766 501 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC-1.59□□□□□ -2.66
VPS13AQ96RL7 MIR1302-8-201ENST00000408342 128 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 MIR1185-1-201ENST00000408598 86 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 COX6CP10-201ENST00000416832 224 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 AC009237.7-201ENST00000447357 229 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 RPL39P38-201ENST00000467018 153 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 AC105417.1-201ENST00000514691 285 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 AC027449.1-201ENST00000608890 407 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 SEC63P2-201ENST00000503863 1939 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 SUMO1P2-201ENST00000452524 304 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 AP002802.2-201ENST00000605877 235 ntBASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC-1.6□□□□□ -2.67
VPS13AQ96RL7 RNA5SP323-201ENST00000391094 133 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 AC090186.1-201ENST00000605991 572 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 MIR6851-201ENST00000617060 67 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 AC007490.1-201ENST00000624321 703 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 AC017104.5-201ENST00000637647 639 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 RNU5E-8P-201ENST00000363502 116 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 RNU6-187P-201ENST00000384139 106 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 MRPS10P2-201ENST00000431226 381 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 RPL39P39-201ENST00000455840 151 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 AC009318.4-201ENST00000620496 486 ntBASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-1.61□□□□□ -2.67
VPS13AQ96RL7 MIR527-201ENST00000385244 85 ntBASIC-1.61□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms