Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MIR1283-1-201ENST00000408494 87 ntBASIC1.66□□□□□ -2.14
ZNF560Q96MR9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.66□□□□□ -2.14
ZNF560Q96MR9 TRBVA-201ENST00000498804 316 ntBASIC1.66□□□□□ -2.14
ZNF560Q96MR9 RNU6-856P-201ENST00000516959 98 ntBASIC1.66□□□□□ -2.14
ZNF560Q96MR9 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.66□□□□□ -2.14
ZNF560Q96MR9 CTHRC1P1-201ENST00000605383 469 ntBASIC1.66□□□□□ -2.14
ZNF560Q96MR9 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.66□□□□□ -2.14
ZNF560Q96MR9 AL133215.3-201ENST00000609801 448 ntBASIC1.66□□□□□ -2.14
ZNF560Q96MR9 MIR8074-201ENST00000615081 81 ntBASIC1.66□□□□□ -2.14
ZNF560Q96MR9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
ZNF560Q96MR9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.65□□□□□ -2.15
ZNF560Q96MR9 RNY3P3-201ENST00000363816 102 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 RNA5SP363-201ENST00000365072 115 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.372-201ENST00000365599 102 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.517-201ENST00000384551 106 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 AC108667.1-201ENST00000428618 249 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.65□□□□□ -2.15
ZNF560Q96MR9 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.65□□□□□ -2.15
ZNF560Q96MR9 AC004386.2-201ENST00000441858 148 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.665-201ENST00000516177 98 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 RNU6-506P-201ENST00000516553 94 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 MIR4303-201ENST00000581299 66 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 MIR5006-201ENST00000583027 110 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 AP000907.4-201ENST00000604143 237 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 RMST_3.1-201ENST00000611651 109 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.65□□□□□ -2.15
ZNF560Q96MR9 AC099654.12-201ENST00000639868 649 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 AP000648.3-201ENST00000623539 4507 ntBASIC1.65□□□□□ -2.15
ZNF560Q96MR9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.64□□□□□ -2.15
ZNF560Q96MR9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.64□□□□□ -2.15
ZNF560Q96MR9 WWP1P1-201ENST00000466609 2769 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.373-201ENST00000365600 103 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 RNU6-877P-201ENST00000383868 107 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 RNU6-997P-201ENST00000384725 107 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
ZNF560Q96MR9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
ZNF560Q96MR9 RPL21P111-201ENST00000418453 477 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC099677.2-201ENST00000436385 175 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 UBE2V1P8-201ENST00000437166 265 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC009237.7-201ENST00000447357 229 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AF186996.7-201ENST00000492781 209 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 FAM206BP-201ENST00000510179 541 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC025465.3-201ENST00000510570 311 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 SNORA31.24-201ENST00000517232 57 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC245505.1-201ENST00000556398 224 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 MIR4753-201ENST00000585119 83 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 SNRPGP20-201ENST00000604477 205 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC069114.2-201ENST00000604699 304 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC080013.6-201ENST00000606185 215 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 uc_338.5-201ENST00000611839 155 ntBASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.64□□□□□ -2.15
ZNF560Q96MR9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.64□□□□□ -2.15
ZNF560Q96MR9 AC245060.5-201ENST00000610778 3293 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 MIR424-201ENST00000362227 98 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 RNU6-451P-201ENST00000362921 107 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.256-201ENST00000364594 104 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 RNU6-60P-201ENST00000364792 103 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 RNU6-418P-201ENST00000384035 107 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.530-201ENST00000384587 101 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 AL590002.1-201ENST00000406554 418 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 MIR1323-201ENST00000408090 73 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.615-201ENST00000410769 117 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 C8orf59P1-201ENST00000429930 303 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 HMGN2P26-201ENST00000463169 339 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.63□□□□□ -2.15
ZNF560Q96MR9 RNU6-948P-201ENST00000516374 107 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 MTND1P35-201ENST00000526739 508 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 AC016925.2-201ENST00000605108 242 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.63□□□□□ -2.15
ZNF560Q96MR9 MTND4P5-201ENST00000435821 1374 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.41-201ENST00000362646 102 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RNU6-862P-201ENST00000362804 105 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RNU1-42P-201ENST00000364033 160 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RNU6-1019P-201ENST00000364424 107 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RNU6-338P-201ENST00000383888 105 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RNU6-439P-201ENST00000384188 106 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 MIR520A-201ENST00000384862 85 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 EBAG9P1-201ENST00000418955 543 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 ZNF885P-201ENST00000420174 1098 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RPL23AP75-201ENST00000491601 451 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC091435.1-201ENST00000505442 584 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RNU6-314P-201ENST00000516574 104 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC016957.1-201ENST00000534895 309 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 RRN3P3-201ENST00000549207 578 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 ZNF519P2-201ENST00000557032 169 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC146944.4-201ENST00000602697 718 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AL645939.4-201ENST00000604495 135 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AL353149.1-201ENST00000610667 244 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC015540.1-201ENST00000615828 501 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC068205.3-201ENST00000636385 468 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 AC010615.1-201ENST00000594254 1764 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 BX322639.1-202ENST00000423987 2213 ntBASIC1.62□□□□□ -2.15
ZNF560Q96MR9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
ZNF560Q96MR9 MIR126-201ENST00000362291 85 ntBASIC1.61□□□□□ -2.15
ZNF560Q96MR9 Y_RNA.38-201ENST00000362617 102 ntBASIC1.61□□□□□ -2.15
ZNF560Q96MR9 MIR181A1-201ENST00000385026 110 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms