Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR518C-201ENST00000384822 101 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 MIR181A2-201ENST00000384863 110 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 U3.39-201ENST00000408569 239 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 snoU13.22-201ENST00000459428 104 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-498P-201ENST00000459468 107 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 AC117454.1-201ENST00000491120 168 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-63P-201ENST00000516690 95 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 RNU6-667P-201ENST00000517186 102 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 SUMO2P18-201ENST00000518873 252 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 AC090616.3-201ENST00000582184 217 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
CCDC140Q96MF4 AL021368.2-201ENST00000606125 5352 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 AC245060.5-201ENST00000610778 3293 ntBASIC2.99□□□□□ -1.93
CCDC140Q96MF4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 RNU6-1205P-201ENST00000363625 106 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 RNU6-271P-201ENST00000363858 105 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.238-201ENST00000364441 102 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.240-201ENST00000364469 95 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 RNU4-17P-201ENST00000365598 141 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AP002088.1-201ENST00000382740 395 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 SNORD116-13-201ENST00000384408 92 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 RNU2-48P-201ENST00000410694 191 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC123900.1-201ENST00000420390 96 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC008134.1-201ENST00000420943 193 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 RPS27P22-201ENST00000478056 241 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC006483.1-201ENST00000487308 313 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC093259.1-201ENST00000509755 300 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 SNORA4.4-201ENST00000515921 135 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC004832.4-201ENST00000608952 331 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC034229.5-201ENST00000624258 185 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 AC021753.1-201ENST00000635724 168 ntBASIC2.98□□□□□ -1.93
CCDC140Q96MF4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC140Q96MF4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 Y_RNA.182-201ENST00000363880 111 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 SNORA8.3-201ENST00000384679 139 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AC016909.1-201ENST00000415916 166 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AL445687.1-201ENST00000439946 251 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 MTCO1P44-201ENST00000441935 243 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 EEF1B2P7-201ENST00000451177 676 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AC091021.1-201ENST00000468051 388 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 RPS26P55-201ENST00000471178 356 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 RNA5SP208-201ENST00000516156 78 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AC100767.1-201ENST00000528178 123 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 MIR3133-201ENST00000583157 78 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AL137849.1-201ENST00000604767 169 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 AC090115.4-201ENST00000609970 188 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 MIR6875-201ENST00000617506 72 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 SNORA50A-202ENST00000629536 136 ntBASIC2.97□□□□□ -1.93
CCDC140Q96MF4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC140Q96MF4 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
CCDC140Q96MF4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.93
CCDC140Q96MF4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 AC138915.1-201ENST00000565427 1685 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.435-201ENST00000384095 112 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 RNU6-804P-201ENST00000384286 107 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 MIR23B-201ENST00000384832 97 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 MIR134-201ENST00000385258 73 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 AC003685.2-201ENST00000422795 395 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 RNU7-170P-201ENST00000459303 61 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 RPL21P129-201ENST00000491732 478 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 AC104619.4-201ENST00000510773 249 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.96□□□□□ -1.94
CCDC140Q96MF4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.96□□□□□ -1.94
CCDC140Q96MF4 AC022695.1-201ENST00000522089 237 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms