Protein–RNA interactions for Protein: Q8TEJ3

SH3RF3, SH3 domain-containing RING finger protein 3, humanhuman

Predicted RBP Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF3Q8TEJ3 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SH3RF3Q8TEJ3 AC004944.1-201ENST00000517807 3059 ntBASIC3.36□□□□□ -1.87
SH3RF3Q8TEJ3 AC022336.2-201ENST00000568966 2538 ntBASIC3.36□□□□□ -1.87
SH3RF3Q8TEJ3 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.36□□□□□ -1.87
SH3RF3Q8TEJ3 AC233981.2-201ENST00000611524 1614 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 SNORD115-32-201ENST00000364079 82 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU4-84P-201ENST00000364200 139 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 Y_RNA.262-201ENST00000364641 102 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-20P-201ENST00000384106 107 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-514P-201ENST00000384208 107 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-166P-201ENST00000384371 107 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 Y_RNA.571-201ENST00000384753 98 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 SNORA40C-201ENST00000391285 128 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AL138827.1-201ENST00000402666 306 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AL357139.1-201ENST00000407792 426 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNA5SP184-201ENST00000411071 108 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 SNORD109B-201ENST00000458961 67 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 SNORD109A-201ENST00000459128 67 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AC006483.1-201ENST00000487308 313 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AC092185.1-201ENST00000491371 97 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AF186996.7-201ENST00000492781 209 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-377P-201ENST00000515965 102 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RN7SKP43-201ENST00000516173 320 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-919P-201ENST00000516731 104 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-1282P-201ENST00000516735 96 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 HSPE1P7-201ENST00000604681 321 ntBASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.35□□□□□ -1.87
SH3RF3Q8TEJ3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 MAPK10-322ENST00000641485 4530 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AL109809.4-201ENST00000603520 2185 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 MIR449A-201ENST00000362113 91 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-1175P-201ENST00000365200 107 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-741P-201ENST00000383889 107 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-843P-201ENST00000384454 104 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 SNORA46.1-201ENST00000391069 153 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 SNORA48.8-201ENST00000391324 134 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AC096638.1-201ENST00000444678 216 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RN7SL75P-201ENST00000461926 281 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 HMGB3P3-201ENST00000510526 400 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 SNORA40.9-201ENST00000515895 93 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-1114P-201ENST00000516022 107 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RNU6-966P-201ENST00000516479 104 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RN7SKP49-201ENST00000516675 260 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RNA5SP291-201ENST00000517222 105 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AP005660.1-201ENST00000522972 293 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AL133393.1-201ENST00000603277 287 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 RMST_6.1-201ENST00000611980 203 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AC090132.2-201ENST00000615881 347 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 AC092593.1-201ENST00000515413 1815 ntBASIC3.34□□□□□ -1.87
SH3RF3Q8TEJ3 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.34□□□□□ -1.88
SH3RF3Q8TEJ3 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 RNU6-799P-201ENST00000363567 107 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 RNA5SP139-201ENST00000364340 117 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 RNU4-56P-201ENST00000364700 142 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 Y_RNA.412-201ENST00000384001 104 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 AC139453.3-201ENST00000493276 369 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 AC245166.1-201ENST00000521012 253 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 OR4G2P-202ENST00000641004 1759 ntBASIC3.33□□□□□ -1.88
SH3RF3Q8TEJ3 AL136360.1-201ENST00000503377 1900 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AC093831.2-201ENST00000624393 3427 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 Y_RNA.127-201ENST00000363386 109 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 RNU6-312P-201ENST00000364629 107 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 RNU6-211P-201ENST00000384047 107 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 RNU6-281P-201ENST00000384212 103 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 MIR512-1-201ENST00000384913 84 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 MIR32-201ENST00000384965 70 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 MIR10B-201ENST00000385011 110 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 MIR329-1-201ENST00000385028 80 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 Z85995.1-201ENST00000415547 335 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AC024067.1-201ENST00000426199 223 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AC063976.3-201ENST00000426849 329 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 SEPT7P4-201ENST00000437076 306 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 Z82210.1-201ENST00000440037 231 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AP002884.2-201ENST00000471647 395 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 RPL23AP49-201ENST00000492925 468 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 RNU6-1256P-201ENST00000516539 103 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AP000867.2-201ENST00000532468 320 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AL391261.3-201ENST00000557194 520 ntBASIC3.32□□□□□ -1.88
SH3RF3Q8TEJ3 AC233702.2-202ENST00000562547 291 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms