Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AK3P2-201ENST00000507976 429 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 RNU2-34P-201ENST00000516534 121 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 RNU6-410P-201ENST00000517006 107 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AL022161.1-201ENST00000604390 213 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AC002044.1-201ENST00000606707 158 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 MIR6513-201ENST00000621188 64 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AL136221.1-201ENST00000621449 509 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 SNORA72.2-201ENST00000365028 127 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 RNU6-1029P-201ENST00000384109 107 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 RNU6-1235P-201ENST00000384559 107 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 MIR300-201ENST00000401138 83 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 AC079781.2-201ENST00000446424 169 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 RNU7-182P-201ENST00000459009 62 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 RNU6-498P-201ENST00000459468 107 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 HMGN1P12-201ENST00000499125 195 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 MTATP6P9-201ENST00000515039 680 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 RNU6-405P-201ENST00000516637 110 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 AP003461.1-201ENST00000528866 78 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 MTCO3P23-201ENST00000561363 289 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 AC022306.3-201ENST00000619930 550 ntBASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC112Q8NEF3 snoU2-30.2-201ENST00000362805 70 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RNU6-434P-201ENST00000384376 107 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RNU6-1127P-201ENST00000384580 107 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RNY1P4-201ENST00000384595 115 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 MIR92A1-201ENST00000385233 78 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 SNORD70.1-201ENST00000391007 85 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RNU6-1093P-201ENST00000391194 107 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RNU4-46P-201ENST00000410818 138 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 AL354692.1-201ENST00000423044 315 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 GPR143P-201ENST00000434155 205 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 HMGN2P34-201ENST00000437647 269 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RPL39P38-201ENST00000467018 153 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 RNA5SP436-201ENST00000516020 115 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 SNORA70.22-201ENST00000517160 124 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 MRPS36P3-201ENST00000519284 130 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 SUMO2P16-201ENST00000519475 264 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 AGGF1P4-201ENST00000568249 801 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 AC021506.2-201ENST00000612354 169 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 MIR6779-201ENST00000617283 64 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 AC007742.2-201ENST00000618226 398 ntBASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.68□□□□□ -2.3
CCDC112Q8NEF3 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 RNU5F-7P-201ENST00000363696 115 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 MIR608-201ENST00000384820 100 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 MIR1-2-201ENST00000384961 85 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 RPS3AP3-201ENST00000411933 242 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AL593851.1-201ENST00000426171 157 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC009961.2-201ENST00000435771 251 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC016717.1-201ENST00000448918 286 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 RNU7-34P-201ENST00000459394 64 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 MTND2P14-201ENST00000482139 351 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC010486.2-201ENST00000505572 483 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 PDCD5P2-201ENST00000507570 312 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 RNU6-948P-201ENST00000516374 107 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 RN7SKP49-201ENST00000516675 260 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC136628.3-201ENST00000521868 290 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 AC104458.1-201ENST00000608243 463 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 SEPT14P19-203ENST00000633205 211 ntBASIC0.67□□□□□ -2.3
CCDC112Q8NEF3 RNA5SP347-201ENST00000362445 119 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNU6-1214P-201ENST00000363650 109 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNU6-266P-201ENST00000364225 107 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNY4P34-201ENST00000364779 95 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 Y_RNA.287-201ENST00000364853 94 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNU6-108P-201ENST00000365558 107 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNU6-975P-201ENST00000384296 105 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 MIR605-201ENST00000385078 83 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNA5SP109-201ENST00000391010 116 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNU6-195P-201ENST00000411352 109 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 MTND3P17-201ENST00000416968 344 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AC090960.1-201ENST00000421072 306 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 MTCO2P34-201ENST00000421994 607 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RAB28P5-201ENST00000427490 651 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AL606517.2-201ENST00000442855 241 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 MIR4703-201ENST00000577728 79 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AL929325.1-201ENST00000603096 117 ntBASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC112Q8NEF3 RNU6-1097P-201ENST00000363586 107 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 RNU6-733P-201ENST00000410759 104 ntBASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.65□□□□□ -2.31
CCDC112Q8NEF3 RPS29P15-201ENST00000458329 171 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 151.8 ms