Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RPL23AP3-201ENST00000453844 468 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC099522.1-202ENST00000514718 367 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 SCARNA24.2-201ENST00000516968 130 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC107934.2-201ENST00000518653 310 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC026271.5-201ENST00000577873 130 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC091167.4-201ENST00000605079 184 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 SNORA62.6-201ENST00000606322 83 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC090115.4-201ENST00000609970 188 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC108206.1-201ENST00000570186 4159 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 SNORD115-30-201ENST00000364117 82 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 SNORA46-201ENST00000384762 135 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 DBIP2-201ENST00000419076 262 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 RPL18P10-201ENST00000425606 538 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC016717.1-201ENST00000448918 286 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC010531.2-201ENST00000465012 153 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 RN7SL604P-201ENST00000492589 296 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 SNORA70.12-201ENST00000516084 153 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 RNU6-579P-201ENST00000516879 102 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 SCARNA20.6-201ENST00000517251 106 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 YPEL5P3-201ENST00000547227 352 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC013412.1-201ENST00000610687 192 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 U2.14-201ENST00000615943 113 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 MIR7703-201ENST00000620784 77 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 AC011944.2-201ENST00000624440 683 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 MIR3653-201ENST00000625572 110 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 U6.115-201ENST00000636045 103 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 MAPK10-266ENST00000641066 6555 ntBASIC2.78□□□□□ -1.96
CLRN3Q8NCR9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
CLRN3Q8NCR9 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 MIR383-201ENST00000362257 73 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.416-201ENST00000384014 113 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 MTCO1P44-201ENST00000441935 243 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 MRPS10P1-201ENST00000448483 130 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 AC091167.1-201ENST00000492017 396 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 RNU6-1023P-201ENST00000516137 106 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 AC005828.6-201ENST00000606610 232 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 AC114781.5-201ENST00000615297 108 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 MIR8059-201ENST00000620427 81 ntBASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CLRN3Q8NCR9 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 SNORD114-7-201ENST00000362520 77 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 SNORA20.1-201ENST00000364790 130 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 SNORD14D-201ENST00000384390 87 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 AL031003.1-201ENST00000404229 172 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 RNU6-710P-201ENST00000410424 105 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 RN7SKP284-201ENST00000411002 343 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 RNU6-847P-201ENST00000411115 108 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 RPL23AP67-201ENST00000465341 474 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 RNU6-436P-201ENST00000516171 114 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 RNU6-966P-201ENST00000516479 104 ntBASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CLRN3Q8NCR9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 RNU6-271P-201ENST00000363858 105 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.329-201ENST00000365209 107 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 Y_RNA.418-201ENST00000384029 102 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 RNU6-1072P-201ENST00000384703 107 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 RNU6-443P-201ENST00000384780 107 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC016397.1-201ENST00000412463 242 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 RNU6-856P-201ENST00000516959 98 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC025647.1-201ENST00000517879 253 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC087441.2-201ENST00000529141 262 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 CYCSP26-201ENST00000534107 320 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 MIR3128-201ENST00000581957 66 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AL512605.2-201ENST00000592972 256 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AC006435.5-201ENST00000624486 112 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 AL159152.1-201ENST00000635019 2587 ntBASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.75□□□□□ -1.97
CLRN3Q8NCR9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms