Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 RNU6-652P-201ENST00000365488 107 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 RNU6-675P-201ENST00000384236 104 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 RPS26P47-201ENST00000427219 348 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 RPL23AP83-201ENST00000434984 473 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AL121890.1-201ENST00000435457 205 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC023449.1-201ENST00000454464 154 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 SRIP1-201ENST00000489235 288 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC083906.5-201ENST00000503722 328 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC005921.1-201ENST00000510589 286 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC026726.1-201ENST00000512859 601 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC097462.1-201ENST00000514125 324 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 AC009163.5-201ENST00000575421 637 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 MIR6134-201ENST00000617606 109 ntBASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NPAS3Q8IXF0 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AC017071.1-201ENST00000564407 2204 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 RNU1-75P-201ENST00000347264 129 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 SNORD115-13-201ENST00000363358 82 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 SNORD115-16-201ENST00000363887 82 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 SNORD115-1-201ENST00000364961 82 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 RNA5SP97-201ENST00000365006 84 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 RNU6-418P-201ENST00000384035 107 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 MIR153-1-201ENST00000384914 90 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 SNORA26-201ENST00000391286 122 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 NDUFB1P1-201ENST00000435191 180 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 SNRPGP3-201ENST00000469405 227 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AIG1P1-201ENST00000503376 148 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 RNU6-795P-201ENST00000516323 103 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 RNU2-44P-201ENST00000516795 194 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 RN7SKP289-201ENST00000517244 295 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AC069240.1-201ENST00000548774 375 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AC090897.2-201ENST00000581715 130 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AL929325.1-201ENST00000603096 117 ntBASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.11□□□□□ -1.75
NPAS3Q8IXF0 AC058791.1-201ENST00000608412 3198 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AC011266.1-201ENST00000624119 3569 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 U3.8-201ENST00000363675 217 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 Y_RNA.486-201ENST00000384398 107 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 MIR873-201ENST00000401120 77 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AL355796.1-201ENST00000406706 323 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 SNORA3.3-201ENST00000408712 125 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AL590383.1-201ENST00000428602 75 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AL353705.1-201ENST00000433468 480 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 SCARNA14-201ENST00000516903 136 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AC027419.1-201ENST00000522976 328 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AC105137.2-201ENST00000569073 466 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 MIR4512-201ENST00000583257 77 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AL161756.2-201ENST00000604597 246 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 AC019176.2-201ENST00000611579 315 ntBASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
NPAS3Q8IXF0 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 RNU6-486P-201ENST00000363116 107 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 Y_RNA.190-201ENST00000363964 101 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 RNU6-146P-201ENST00000384602 108 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 Y_RNA.565-201ENST00000384719 101 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 RN7SKP209-201ENST00000516888 304 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 MIR3136-201ENST00000583498 78 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 PCGEM1.1-201ENST00000613431 131 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 U4atac.1-201ENST00000618345 95 ntBASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NPAS3Q8IXF0 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.09□□□□□ -1.76
NPAS3Q8IXF0 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 MAPK10-372ENST00000641954 3413 ntBASIC4.08□□□□□ -1.76
NPAS3Q8IXF0 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms