Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 Y_RNA.691-201ENST00000516611 103 ntBASIC1.63□□□□□ -2.15
SHHQ15465 RNU6-572P-201ENST00000516724 80 ntBASIC1.63□□□□□ -2.15
SHHQ15465 RN7SKP256-201ENST00000517201 314 ntBASIC1.63□□□□□ -2.15
SHHQ15465 RNA5SP454-201ENST00000517231 127 ntBASIC1.63□□□□□ -2.15
SHHQ15465 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.63□□□□□ -2.15
SHHQ15465 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.63□□□□□ -2.15
SHHQ15465 AL355297.2-201ENST00000604792 129 ntBASIC1.63□□□□□ -2.15
SHHQ15465 AC087045.1-201ENST00000605856 382 ntBASIC1.63□□□□□ -2.15
SHHQ15465 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
SHHQ15465 Y_RNA.33-201ENST00000362591 102 ntBASIC1.62□□□□□ -2.15
SHHQ15465 Y_RNA.135-201ENST00000363439 95 ntBASIC1.62□□□□□ -2.15
SHHQ15465 Y_RNA.315-201ENST00000365117 102 ntBASIC1.62□□□□□ -2.15
SHHQ15465 Y_RNA.324-201ENST00000365165 102 ntBASIC1.62□□□□□ -2.15
SHHQ15465 RNU6-26P-201ENST00000383985 107 ntBASIC1.62□□□□□ -2.15
SHHQ15465 MIR10A-201ENST00000385043 110 ntBASIC1.62□□□□□ -2.15
SHHQ15465 SNORA40.19-201ENST00000390846 128 ntBASIC1.62□□□□□ -2.15
SHHQ15465 RNA5SP118-201ENST00000410385 109 ntBASIC1.62□□□□□ -2.15
SHHQ15465 SNORD56-201ENST00000413522 71 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AL354751.2-201ENST00000415471 210 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AF228730.4-201ENST00000421457 183 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AL354695.1-201ENST00000427935 228 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.62□□□□□ -2.15
SHHQ15465 AL161788.1-201ENST00000441805 169 ntBASIC1.62□□□□□ -2.15
SHHQ15465 UBE2V1P7-201ENST00000446395 340 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.62□□□□□ -2.15
SHHQ15465 NDUFB1P2-201ENST00000449477 176 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AC092991.1-201ENST00000477176 376 ntBASIC1.62□□□□□ -2.15
SHHQ15465 RPL7P42-201ENST00000481005 679 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AC011005.2-201ENST00000487324 359 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AC116655.1-201ENST00000508324 901 ntBASIC1.62□□□□□ -2.15
SHHQ15465 RNU6-581P-201ENST00000516214 105 ntBASIC1.62□□□□□ -2.15
SHHQ15465 Y_RNA.687-201ENST00000516558 91 ntBASIC1.62□□□□□ -2.15
SHHQ15465 RNU6-566P-201ENST00000516790 107 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.62□□□□□ -2.15
SHHQ15465 AC103996.1-201ENST00000555468 102 ntBASIC1.62□□□□□ -2.15
SHHQ15465 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.62□□□□□ -2.15
SHHQ15465 MIR3122-201ENST00000577243 73 ntBASIC1.62□□□□□ -2.15
SHHQ15465 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.62□□□□□ -2.15
SHHQ15465 MIR1273C-201ENST00000578669 77 ntBASIC1.62□□□□□ -2.15
SHHQ15465 AC093913.1-201ENST00000614178 329 ntBASIC1.62□□□□□ -2.15
SHHQ15465 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.62□□□□□ -2.15
SHHQ15465 U6.99-201ENST00000637524 83 ntBASIC1.62□□□□□ -2.15
SHHQ15465 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SHHQ15465 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.61□□□□□ -2.15
SHHQ15465 Y_RNA.31-201ENST00000362574 102 ntBASIC1.61□□□□□ -2.15
SHHQ15465 Y_RNA.166-201ENST00000363730 102 ntBASIC1.61□□□□□ -2.15
SHHQ15465 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
SHHQ15465 Y_RNA.399-201ENST00000383955 105 ntBASIC1.61□□□□□ -2.15
SHHQ15465 RNU6-434P-201ENST00000384376 107 ntBASIC1.61□□□□□ -2.15
SHHQ15465 RNU6-331P-201ENST00000384724 107 ntBASIC1.61□□□□□ -2.15
SHHQ15465 Y_RNA.579-201ENST00000390939 94 ntBASIC1.61□□□□□ -2.15
SHHQ15465 HMGN2P39-201ENST00000398005 273 ntBASIC1.61□□□□□ -2.15
SHHQ15465 AL133475.1-201ENST00000404414 305 ntBASIC1.61□□□□□ -2.15
SHHQ15465 RNA5SP489-201ENST00000410986 109 ntBASIC1.61□□□□□ -2.15
SHHQ15465 HMGN2P19-201ENST00000425149 265 ntBASIC1.61□□□□□ -2.15
SHHQ15465 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.61□□□□□ -2.15
SHHQ15465 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.61□□□□□ -2.15
SHHQ15465 MTND1P17-201ENST00000448961 204 ntBASIC1.61□□□□□ -2.15
SHHQ15465 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.61□□□□□ -2.15
SHHQ15465 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.61□□□□□ -2.15
SHHQ15465 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.61□□□□□ -2.15
SHHQ15465 FGF7P4-201ENST00000509595 295 ntBASIC1.61□□□□□ -2.15
SHHQ15465 AC005741.1-201ENST00000511094 432 ntBASIC1.61□□□□□ -2.15
SHHQ15465 Y_RNA.661-201ENST00000516003 99 ntBASIC1.61□□□□□ -2.15
SHHQ15465 RNA5SP384-201ENST00000516615 116 ntBASIC1.61□□□□□ -2.15
SHHQ15465 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.61□□□□□ -2.15
SHHQ15465 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.61□□□□□ -2.15
SHHQ15465 MIR4790-201ENST00000577799 79 ntBASIC1.61□□□□□ -2.15
SHHQ15465 MIR4287-201ENST00000579398 78 ntBASIC1.61□□□□□ -2.15
SHHQ15465 AC096772.1-201ENST00000609146 564 ntBASIC1.61□□□□□ -2.15
SHHQ15465 U2.17-201ENST00000611454 95 ntBASIC1.61□□□□□ -2.15
SHHQ15465 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.61□□□□□ -2.15
SHHQ15465 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SHHQ15465 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SHHQ15465 AC121333.1-201ENST00000567488 2709 ntBASIC1.6□□□□□ -2.15
SHHQ15465 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.6□□□□□ -2.15
SHHQ15465 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.6□□□□□ -2.15
SHHQ15465 MIR369-201ENST00000362155 70 ntBASIC1.6□□□□□ -2.15
SHHQ15465 SNORD113-7-201ENST00000363762 77 ntBASIC1.6□□□□□ -2.15
SHHQ15465 RNU6-1280P-201ENST00000365211 107 ntBASIC1.6□□□□□ -2.15
SHHQ15465 RNU6-827P-201ENST00000365553 106 ntBASIC1.6□□□□□ -2.15
SHHQ15465 RNU6-395P-201ENST00000365662 106 ntBASIC1.6□□□□□ -2.15
SHHQ15465 SNORD116-11-201ENST00000383882 92 ntBASIC1.6□□□□□ -2.15
SHHQ15465 RNU6-474P-201ENST00000384243 107 ntBASIC1.6□□□□□ -2.15
SHHQ15465 RNU6-842P-201ENST00000384269 107 ntBASIC1.6□□□□□ -2.15
SHHQ15465 Y_RNA.530-201ENST00000384587 101 ntBASIC1.6□□□□□ -2.15
SHHQ15465 EIF4E2P1-201ENST00000393781 255 ntBASIC1.6□□□□□ -2.15
SHHQ15465 Y_RNA.646-201ENST00000410980 101 ntBASIC1.6□□□□□ -2.15
SHHQ15465 RNU6-370P-201ENST00000411008 104 ntBASIC1.6□□□□□ -2.15
SHHQ15465 Y_RNA.623-201ENST00000411128 95 ntBASIC1.6□□□□□ -2.15
SHHQ15465 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.6□□□□□ -2.15
SHHQ15465 POLR2J4-204ENST00000418424 324 ntBASIC1.6□□□□□ -2.15
SHHQ15465 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.6□□□□□ -2.15
SHHQ15465 USP9YP30-201ENST00000430729 455 ntBASIC1.6□□□□□ -2.15
SHHQ15465 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.6□□□□□ -2.15
SHHQ15465 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.6□□□□□ -2.15
SHHQ15465 AL078601.1-201ENST00000444542 271 ntBASIC1.6□□□□□ -2.15
SHHQ15465 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.6□□□□□ -2.15
SHHQ15465 AL031274.1-201ENST00000450334 232 ntBASIC1.6□□□□□ -2.15
SHHQ15465 MIR2053-201ENST00000459295 91 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms