Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC009093.8-201ENST00000641769 292 ntBASIC3.36□□□□□ -1.87
RNF4P78317 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
RNF4P78317 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
RNF4P78317 AC006504.1-201ENST00000562493 3666 ntBASIC3.35□□□□□ -1.87
RNF4P78317 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
RNF4P78317 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
RNF4P78317 SNORD9-201ENST00000362566 104 ntBASIC3.35□□□□□ -1.87
RNF4P78317 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.35□□□□□ -1.87
RNF4P78317 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.35□□□□□ -1.87
RNF4P78317 HMGN2P9-201ENST00000476875 229 ntBASIC3.35□□□□□ -1.87
RNF4P78317 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.35□□□□□ -1.87
RNF4P78317 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.35□□□□□ -1.87
RNF4P78317 RNA5SP112-201ENST00000515937 99 ntBASIC3.35□□□□□ -1.87
RNF4P78317 RN7SKP83-201ENST00000516512 178 ntBASIC3.35□□□□□ -1.87
RNF4P78317 UCA1.1-201ENST00000620952 75 ntBASIC3.35□□□□□ -1.87
RNF4P78317 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.35□□□□□ -1.87
RNF4P78317 AC110079.1-202ENST00000635213 138 ntBASIC3.35□□□□□ -1.87
RNF4P78317 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
RNF4P78317 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
RNF4P78317 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
RNF4P78317 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
RNF4P78317 AC110774.1-201ENST00000623567 2018 ntBASIC3.34□□□□□ -1.87
RNF4P78317 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
RNF4P78317 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
RNF4P78317 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
RNF4P78317 Y_RNA.341-201ENST00000365341 102 ntBASIC3.34□□□□□ -1.87
RNF4P78317 MIR23B-201ENST00000384832 97 ntBASIC3.34□□□□□ -1.87
RNF4P78317 MIR586-201ENST00000385035 97 ntBASIC3.34□□□□□ -1.87
RNF4P78317 MIR29B2-201ENST00000385055 81 ntBASIC3.34□□□□□ -1.87
RNF4P78317 RNU6-381P-201ENST00000391259 108 ntBASIC3.34□□□□□ -1.87
RNF4P78317 MIR548I2-201ENST00000408348 149 ntBASIC3.34□□□□□ -1.87
RNF4P78317 RNU6-710P-201ENST00000410424 105 ntBASIC3.34□□□□□ -1.87
RNF4P78317 AL139281.1-201ENST00000422120 335 ntBASIC3.34□□□□□ -1.87
RNF4P78317 SRIP1-201ENST00000489235 288 ntBASIC3.34□□□□□ -1.87
RNF4P78317 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.34□□□□□ -1.87
RNF4P78317 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.34□□□□□ -1.87
RNF4P78317 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.34□□□□□ -1.87
RNF4P78317 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.34□□□□□ -1.87
RNF4P78317 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.34□□□□□ -1.87
RNF4P78317 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
RNF4P78317 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
RNF4P78317 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.34□□□□□ -1.87
RNF4P78317 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.34□□□□□ -1.88
RNF4P78317 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
RNF4P78317 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
RNF4P78317 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.34□□□□□ -1.88
RNF4P78317 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
RNF4P78317 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
RNF4P78317 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
RNF4P78317 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.33□□□□□ -1.88
RNF4P78317 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
RNF4P78317 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
RNF4P78317 Y_RNA.121-201ENST00000363309 113 ntBASIC3.33□□□□□ -1.88
RNF4P78317 Y_RNA.124-201ENST00000363339 93 ntBASIC3.33□□□□□ -1.88
RNF4P78317 SNORA51.4-201ENST00000364993 124 ntBASIC3.33□□□□□ -1.88
RNF4P78317 SNORD113-1-201ENST00000365321 69 ntBASIC3.33□□□□□ -1.88
RNF4P78317 RNU6-1274P-201ENST00000384557 107 ntBASIC3.33□□□□□ -1.88
RNF4P78317 Y_RNA.572-201ENST00000384757 98 ntBASIC3.33□□□□□ -1.88
RNF4P78317 MIR449B-201ENST00000384995 97 ntBASIC3.33□□□□□ -1.88
RNF4P78317 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.33□□□□□ -1.88
RNF4P78317 AL139095.1-201ENST00000404326 391 ntBASIC3.33□□□□□ -1.88
RNF4P78317 RPS29P4-201ENST00000414733 161 ntBASIC3.33□□□□□ -1.88
RNF4P78317 CYCSP4-201ENST00000429682 331 ntBASIC3.33□□□□□ -1.88
RNF4P78317 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.33□□□□□ -1.88
RNF4P78317 AC092185.1-201ENST00000491371 97 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AC093663.1-201ENST00000497190 394 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.33□□□□□ -1.88
RNF4P78317 RAC1P5-201ENST00000512182 576 ntBASIC3.33□□□□□ -1.88
RNF4P78317 Y_RNA.797-201ENST00000515977 94 ntBASIC3.33□□□□□ -1.88
RNF4P78317 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AC021269.2-201ENST00000532318 330 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.33□□□□□ -1.88
RNF4P78317 MIR4444-1-201ENST00000581696 74 ntBASIC3.33□□□□□ -1.88
RNF4P78317 MIR4444-2-201ENST00000584390 74 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.33□□□□□ -1.88
RNF4P78317 AC023043.3-201ENST00000593113 385 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.33□□□□□ -1.88
RNF4P78317 AP001485.1-201ENST00000604799 199 ntBASIC3.33□□□□□ -1.88
RNF4P78317 AC069294.1-201ENST00000608397 350 ntBASIC3.33□□□□□ -1.88
RNF4P78317 MTND1P7-201ENST00000632801 297 ntBASIC3.33□□□□□ -1.88
RNF4P78317 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNF4P78317 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNF4P78317 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNF4P78317 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
RNF4P78317 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNF4P78317 Y_RNA.23-201ENST00000362496 106 ntBASIC3.32□□□□□ -1.88
RNF4P78317 Y_RNA.75-201ENST00000362927 97 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RNU6-944P-201ENST00000364023 107 ntBASIC3.32□□□□□ -1.88
RNF4P78317 snoU2_19.4-201ENST00000364329 80 ntBASIC3.32□□□□□ -1.88
RNF4P78317 Y_RNA.291-201ENST00000364886 113 ntBASIC3.32□□□□□ -1.88
RNF4P78317 Y_RNA.368-201ENST00000365547 113 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RNU6-449P-201ENST00000383914 107 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RNU6-1083P-201ENST00000384022 107 ntBASIC3.32□□□□□ -1.88
RNF4P78317 MIR218-2-201ENST00000385006 110 ntBASIC3.32□□□□□ -1.88
RNF4P78317 MIR670-201ENST00000390142 98 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RNU7-14P-201ENST00000459331 62 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RN7SL93P-201ENST00000463035 293 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RPS29P2-201ENST00000479278 136 ntBASIC3.32□□□□□ -1.88
RNF4P78317 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.32□□□□□ -1.88
RNF4P78317 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms