Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU6-174P-201ENST00000410406 106 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 RNA5SP494-201ENST00000410653 129 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.42□□□□□ -2.18
SHMT2P34897 NDUFA5P4-201ENST00000436704 385 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.42□□□□□ -2.18
SHMT2P34897 HSPE1P24-201ENST00000450782 238 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.42□□□□□ -2.18
SHMT2P34897 RNU7-187P-201ENST00000458985 68 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.42□□□□□ -2.18
SHMT2P34897 RPS23P5-201ENST00000495419 428 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 SNORA31.17-201ENST00000516953 127 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AC026371.1-201ENST00000551867 419 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.42□□□□□ -2.18
SHMT2P34897 FGF7P1-201ENST00000582820 288 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.42□□□□□ -2.18
SHMT2P34897 AL133215.3-201ENST00000609801 448 ntBASIC1.42□□□□□ -2.18
SHMT2P34897 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.42□□□□□ -2.18
SHMT2P34897 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
SHMT2P34897 RNU6-562P-201ENST00000362731 107 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.41□□□□□ -2.18
SHMT2P34897 RNU6-128P-201ENST00000383976 107 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 RNU6-784P-201ENST00000384330 106 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 MIR521-1-201ENST00000384902 87 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 AL590002.1-201ENST00000406554 418 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 RNU4-62P-201ENST00000410125 130 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 AC004866.1-201ENST00000411748 78 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 AC007098.1-201ENST00000420122 367 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.41□□□□□ -2.18
SHMT2P34897 RNU1-98P-201ENST00000458992 160 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 RNU6-314P-201ENST00000516574 104 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.41□□□□□ -2.18
SHMT2P34897 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.41□□□□□ -2.18
SHMT2P34897 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 AC005562.2-201ENST00000618264 111 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.41□□□□□ -2.18
SHMT2P34897 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.41□□□□□ -2.18
SHMT2P34897 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.41□□□□□ -2.18
SHMT2P34897 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SHMT2P34897 MIR378A-201ENST00000362177 66 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 RNU6-545P-201ENST00000362681 104 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 RNU4-13P-201ENST00000364019 141 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 RNU6-439P-201ENST00000384188 106 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SHMT2P34897 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SHMT2P34897 MTCO3P18-201ENST00000440206 761 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 AC007395.1-201ENST00000451333 677 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.4□□□□□ -2.19
SHMT2P34897 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.4□□□□□ -2.19
SHMT2P34897 RNU6-856P-201ENST00000516959 98 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 SUMO2P18-201ENST00000518873 252 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.4□□□□□ -2.19
SHMT2P34897 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.4□□□□□ -2.19
SHMT2P34897 ZNF519P2-201ENST00000557032 169 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 AC026470.2-201ENST00000561492 181 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.4□□□□□ -2.19
SHMT2P34897 MIR5094-201ENST00000578766 85 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 MIR3976-201ENST00000606807 139 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 MIR7974-201ENST00000615835 79 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SHMT2P34897 AC233981.2-201ENST00000611524 1614 ntBASIC1.4□□□□□ -2.19
SHMT2P34897 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.39□□□□□ -2.19
SHMT2P34897 ZNF209P-201ENST00000593450 2304 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 U8.1-201ENST00000362843 134 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 RNU6-1252P-201ENST00000363054 104 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 RNU6-112P-201ENST00000363599 104 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 Y_RNA.373-201ENST00000365600 103 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 RNU6-933P-201ENST00000384424 107 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 RNU6-296P-201ENST00000384608 107 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 MIR549A-201ENST00000385268 96 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.39□□□□□ -2.19
SHMT2P34897 NCOR1P3-201ENST00000420479 303 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC099677.2-201ENST00000436385 175 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AL357134.1-201ENST00000445848 426 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SHMT2P34897 OR2AQ1P-201ENST00000451972 200 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.39□□□□□ -2.19
SHMT2P34897 TRBVA-201ENST00000498804 316 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC091435.1-201ENST00000505442 584 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.39□□□□□ -2.19
SHMT2P34897 FAM206BP-201ENST00000510179 541 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.39□□□□□ -2.19
SHMT2P34897 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.39□□□□□ -2.19
SHMT2P34897 RNU1-92P-201ENST00000517017 135 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC109635.3-201ENST00000529536 185 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.39□□□□□ -2.19
SHMT2P34897 AL161670.1-201ENST00000554348 137 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 DNAJC19P9-201ENST00000555084 351 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.39□□□□□ -2.19
SHMT2P34897 SNORA59B-202ENST00000578183 701 ntBASIC1.39□□□□□ -2.19
SHMT2P34897 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.39□□□□□ -2.19
SHMT2P34897 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SHMT2P34897 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.39□□□□□ -2.19
SHMT2P34897 AL159152.1-201ENST00000635019 2587 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 SNORD50.1-201ENST00000362987 71 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 Y_RNA.135-201ENST00000363439 95 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 Y_RNA.530-201ENST00000384587 101 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 RNU6-95P-201ENST00000384697 107 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 MIR181A1-201ENST00000385026 110 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 MIR1283-1-201ENST00000408494 87 ntBASIC1.38□□□□□ -2.19
SHMT2P34897 AL590632.1-201ENST00000424289 371 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms