Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.69□□□□□ -1.82
COL8A1P27658 AC021739.1-201ENST00000559631 174 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 AC140113.4-201ENST00000622087 222 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.68□□□□□ -1.82
COL8A1P27658 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.68□□□□□ -1.82
COL8A1P27658 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
COL8A1P27658 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.68□□□□□ -1.82
COL8A1P27658 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 Y_RNA.73-201ENST00000362910 113 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 Y_RNA.203-201ENST00000364106 102 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 RNU4-36P-201ENST00000364294 144 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 Y_RNA.265-201ENST00000364677 108 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 SNORA4.2-201ENST00000365313 147 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 SNORA5A-201ENST00000384111 134 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 Y_RNA.486-201ENST00000384398 107 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 SNORA1.3-201ENST00000384676 136 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 MIR562-201ENST00000384894 95 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 MIR195-201ENST00000385194 87 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 HDGFP1-201ENST00000405943 252 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 RN7SKP156-201ENST00000410308 342 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 AC018634.1-201ENST00000437554 401 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 RPL27AP5-201ENST00000469428 449 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 AC093663.1-201ENST00000497190 394 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 SCARNA23-201ENST00000516060 130 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 RNU6-830P-201ENST00000516353 107 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 RNU6-504P-201ENST00000516568 104 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 MIR4666B-201ENST00000578142 81 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.68□□□□□ -1.82
COL8A1P27658 AL929325.1-201ENST00000603096 117 ntBASIC3.68□□□□□ -1.82
COL8A1P27658 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
COL8A1P27658 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
COL8A1P27658 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL8A1P27658 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
COL8A1P27658 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.68□□□□□ -1.82
COL8A1P27658 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
COL8A1P27658 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL8A1P27658 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.67□□□□□ -1.82
COL8A1P27658 Z73965.1-201ENST00000623412 2297 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.67□□□□□ -1.82
COL8A1P27658 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
COL8A1P27658 RNU4-13P-201ENST00000364019 141 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 RNA5SP72-201ENST00000364442 117 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 RNU6-1240P-201ENST00000365155 104 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 SNORA1-201ENST00000384107 130 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 MIR183-201ENST00000384958 110 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 SNORA57.3-201ENST00000411095 141 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 AL356535.1-201ENST00000440335 398 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 AP001486.1-201ENST00000463339 476 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 AL049873.1-201ENST00000480540 376 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 RN7SL812P-201ENST00000493791 279 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.67□□□□□ -1.82
COL8A1P27658 RNU6-1149P-201ENST00000516810 97 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 DEFB131E-201ENST00000532329 154 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 AC007229.1-201ENST00000590455 412 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 AC005086.4-201ENST00000623065 213 ntBASIC3.67□□□□□ -1.82
COL8A1P27658 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL8A1P27658 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL8A1P27658 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL8A1P27658 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL8A1P27658 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
COL8A1P27658 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
COL8A1P27658 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL8A1P27658 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.66□□□□□ -1.82
COL8A1P27658 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
COL8A1P27658 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL8A1P27658 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.66□□□□□ -1.82
COL8A1P27658 Y_RNA.344-201ENST00000365381 112 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 RNU6-1181P-201ENST00000384191 106 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 RNU6-675P-201ENST00000384236 104 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 SNORA48.2-201ENST00000390926 124 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 RPL21P3-201ENST00000395517 478 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 RNA5SP146-201ENST00000410743 123 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 snoU13.14-201ENST00000459372 104 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 AC145146.1-201ENST00000496370 254 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 AC010598.1-201ENST00000510378 103 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.66□□□□□ -1.82
COL8A1P27658 U6.105-201ENST00000637379 88 ntBASIC3.66□□□□□ -1.82
COL8A1P27658 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
COL8A1P27658 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL8A1P27658 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL8A1P27658 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL8A1P27658 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL8A1P27658 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL8A1P27658 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL8A1P27658 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
COL8A1P27658 AL356489.2-201ENST00000566968 3528 ntBASIC3.65□□□□□ -1.82
COL8A1P27658 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL8A1P27658 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
COL8A1P27658 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.65□□□□□ -1.83
COL8A1P27658 RNY3P2-201ENST00000362918 102 ntBASIC3.65□□□□□ -1.83
COL8A1P27658 RNU6-979P-201ENST00000383896 107 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms