Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 BPY2DP-201ENST00000422208 265 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.41□□□□□ -1.86
COL6A1P12109 AC078809.1-201ENST00000427601 140 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 AC022018.1-201ENST00000430685 241 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU7-120P-201ENST00000459334 63 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 COX6CP14-201ENST00000469580 174 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RPS4XP22-201ENST00000480755 780 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU6-58P-201ENST00000517143 103 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 AC024405.2-202ENST00000532731 184 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 AC021231.3-201ENST00000558497 370 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.41□□□□□ -1.86
COL6A1P12109 AC009163.5-201ENST00000575421 637 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.41□□□□□ -1.86
COL6A1P12109 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
COL6A1P12109 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.41□□□□□ -1.86
COL6A1P12109 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
COL6A1P12109 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL6A1P12109 Y_RNA.230-201ENST00000364348 109 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 SNORD67-201ENST00000390833 111 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 AC063976.3-201ENST00000426849 329 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 MTCO1P5-201ENST00000433573 344 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.4□□□□□ -1.87
COL6A1P12109 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL6A1P12109 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 MIR2276-201ENST00000516886 89 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.4□□□□□ -1.87
COL6A1P12109 CKS1BP7-201ENST00000522230 235 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 MIR4423-201ENST00000580922 80 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 MIR7515-201ENST00000637837 67 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.4□□□□□ -1.87
COL6A1P12109 HAUS6P2-201ENST00000433254 2404 ntBASIC3.4□□□□□ -1.87
COL6A1P12109 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A1P12109 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.39□□□□□ -1.87
COL6A1P12109 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL6A1P12109 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.39□□□□□ -1.87
COL6A1P12109 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
COL6A1P12109 RNU1-35P-201ENST00000362782 153 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 Y_RNA.76-201ENST00000362931 109 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 RNU6-626P-201ENST00000363354 107 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 SNORD115-8-201ENST00000363856 82 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 Y_RNA.286-201ENST00000364813 102 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 SNORD115-38-201ENST00000365037 82 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 RNU6-1001P-201ENST00000411265 100 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.39□□□□□ -1.87
COL6A1P12109 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.39□□□□□ -1.87
COL6A1P12109 RPL26P26-201ENST00000480251 434 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 Y_RNA.679-201ENST00000516416 91 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 RNU6-567P-201ENST00000516746 107 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 RNA5SP54-201ENST00000516951 92 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 SNORA31.23-201ENST00000517219 133 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 UBL5P4-201ENST00000562584 236 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 AC073476.4-201ENST00000628409 72 ntBASIC3.39□□□□□ -1.87
COL6A1P12109 AC010889.1-201ENST00000566193 2666 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
COL6A1P12109 AL355596.1-201ENST00000565399 3996 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 SNORA18.3-201ENST00000384122 132 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 Y_RNA.570-201ENST00000384750 101 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 MIR329-1-201ENST00000385028 80 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 PCNPP3-201ENST00000393579 471 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 Y_RNA.590-201ENST00000410140 107 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.38□□□□□ -1.87
COL6A1P12109 AC244670.1-201ENST00000436879 112 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.38□□□□□ -1.87
COL6A1P12109 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.38□□□□□ -1.87
COL6A1P12109 HMGN2P10-201ENST00000448085 265 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 AL441985.1-201ENST00000457727 251 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 TRBV12-1-201ENST00000479785 344 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 RNU5F-8P-201ENST00000515941 111 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 MIR4425-201ENST00000580572 84 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 AL359198.2-201ENST00000611836 194 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 AC093010.3-201ENST00000570269 15214 ntBASIC3.38□□□□□ -1.87
COL6A1P12109 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.38□□□□□ -1.87
COL6A1P12109 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.37□□□□□ -1.87
COL6A1P12109 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A1P12109 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A1P12109 RNU6-1020P-201ENST00000363684 107 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 RNU6-740P-201ENST00000364734 105 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 DYNLT3P1-201ENST00000378574 347 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 RNU6-20P-201ENST00000384106 107 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 RNU6-1145P-201ENST00000384246 107 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 SNORA46.1-201ENST00000391069 153 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 RNA5SP390-201ENST00000410191 113 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 Y_RNA.626-201ENST00000411288 95 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 RPL23AP36-201ENST00000413895 458 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.37□□□□□ -1.87
COL6A1P12109 AC092427.1-202ENST00000430569 476 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 EEF1B2P7-201ENST00000451177 676 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.37□□□□□ -1.87
COL6A1P12109 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.37□□□□□ -1.87
COL6A1P12109 SNORA40.9-201ENST00000515895 93 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 RNU6-581P-201ENST00000516214 105 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.37□□□□□ -1.87
COL6A1P12109 AC006001.4-201ENST00000622243 395 ntBASIC3.37□□□□□ -1.87
COL6A1P12109 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.37□□□□□ -1.87
COL6A1P12109 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.37□□□□□ -1.87
COL6A1P12109 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL6A1P12109 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.37□□□□□ -1.87
COL6A1P12109 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms