Protein–RNA interactions for Protein: P08247

SYP, Synaptophysin, humanhuman

Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYPP08247 RNU2-2P-201ENST00000410396 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 RPL27AP5-201ENST00000469428 449 ntBASIC3.42□□□□□ -1.86
SYPP08247 MIR5004-201ENST00000579078 107 ntBASIC3.42□□□□□ -1.86
SYPP08247 MIR4276-201ENST00000584832 70 ntBASIC3.42□□□□□ -1.86
SYPP08247 RNU2-4P-201ENST00000606190 192 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.15-201ENST00000611544 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.16-201ENST00000613119 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.12-201ENST00000613778 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.9-201ENST00000615427 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 AL078604.3-201ENST00000615580 211 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.11-201ENST00000616345 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.2-201ENST00000616535 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.3-201ENST00000617785 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.19-201ENST00000618602 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 RNU2-1-201ENST00000618664 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.6-201ENST00000619225 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.5-201ENST00000619465 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 U2.10-201ENST00000620268 191 ntBASIC3.42□□□□□ -1.86
SYPP08247 MTND1P7-201ENST00000632801 297 ntBASIC3.42□□□□□ -1.86
SYPP08247 MFSD8-233ENST00000641482 4860 ntBASIC3.42□□□□□ -1.86
SYPP08247 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.42□□□□□ -1.86
SYPP08247 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SYPP08247 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
SYPP08247 Y_RNA.121-201ENST00000363309 113 ntBASIC3.41□□□□□ -1.86
SYPP08247 RNU6-1210P-201ENST00000363775 107 ntBASIC3.41□□□□□ -1.86
SYPP08247 RNU6-324P-201ENST00000363957 106 ntBASIC3.41□□□□□ -1.86
SYPP08247 SNORD115-30-201ENST00000364117 82 ntBASIC3.41□□□□□ -1.86
SYPP08247 SNORA18.2-201ENST00000383865 132 ntBASIC3.41□□□□□ -1.86
SYPP08247 Y_RNA.412-201ENST00000384001 104 ntBASIC3.41□□□□□ -1.86
SYPP08247 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.41□□□□□ -1.86
SYPP08247 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SYPP08247 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.41□□□□□ -1.86
SYPP08247 AL135790.2-201ENST00000437701 267 ntBASIC3.41□□□□□ -1.86
SYPP08247 U8.19-201ENST00000459095 133 ntBASIC3.41□□□□□ -1.86
SYPP08247 AC091179.1-201ENST00000461606 579 ntBASIC3.41□□□□□ -1.86
SYPP08247 RN7SL504P-201ENST00000494496 287 ntBASIC3.41□□□□□ -1.86
SYPP08247 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.41□□□□□ -1.86
SYPP08247 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.41□□□□□ -1.86
SYPP08247 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.41□□□□□ -1.86
SYPP08247 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.41□□□□□ -1.86
SYPP08247 LARP7P3-201ENST00000579888 337 ntBASIC3.41□□□□□ -1.86
SYPP08247 MIR548AI-201ENST00000579940 88 ntBASIC3.41□□□□□ -1.86
SYPP08247 MIR5006-201ENST00000583027 110 ntBASIC3.41□□□□□ -1.86
SYPP08247 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SYPP08247 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SYPP08247 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SYPP08247 OTUD4P1-201ENST00000237841 3067 ntBASIC3.4□□□□□ -1.86
SYPP08247 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
SYPP08247 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
SYPP08247 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.86
SYPP08247 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
SYPP08247 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SYPP08247 Y_RNA.23-201ENST00000362496 106 ntBASIC3.4□□□□□ -1.87
SYPP08247 RNU6-655P-201ENST00000362858 107 ntBASIC3.4□□□□□ -1.87
SYPP08247 Y_RNA.75-201ENST00000362927 97 ntBASIC3.4□□□□□ -1.87
SYPP08247 RNA5SP374-201ENST00000362939 125 ntBASIC3.4□□□□□ -1.87
SYPP08247 RNU6-801P-201ENST00000364087 105 ntBASIC3.4□□□□□ -1.87
SYPP08247 RNU6-312P-201ENST00000364629 107 ntBASIC3.4□□□□□ -1.87
SYPP08247 SNORD116-18-201ENST00000383961 92 ntBASIC3.4□□□□□ -1.87
SYPP08247 COTL1P1-201ENST00000422309 375 ntBASIC3.4□□□□□ -1.87
SYPP08247 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.4□□□□□ -1.87
SYPP08247 RN7SKP83-201ENST00000516512 178 ntBASIC3.4□□□□□ -1.87
SYPP08247 AC136628.3-201ENST00000521868 290 ntBASIC3.4□□□□□ -1.87
SYPP08247 AC100767.1-201ENST00000528178 123 ntBASIC3.4□□□□□ -1.87
SYPP08247 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.4□□□□□ -1.87
SYPP08247 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.4□□□□□ -1.87
SYPP08247 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.4□□□□□ -1.87
SYPP08247 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SYPP08247 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.4□□□□□ -1.87
SYPP08247 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
SYPP08247 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SYPP08247 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SYPP08247 SNORA67.2-201ENST00000384300 149 ntBASIC3.39□□□□□ -1.87
SYPP08247 RNU1-57P-201ENST00000384491 166 ntBASIC3.39□□□□□ -1.87
SYPP08247 RNA5SP252-201ENST00000391131 119 ntBASIC3.39□□□□□ -1.87
SYPP08247 AL031003.1-201ENST00000404229 172 ntBASIC3.39□□□□□ -1.87
SYPP08247 RNU4-47P-201ENST00000410876 114 ntBASIC3.39□□□□□ -1.87
SYPP08247 AC002075.2-201ENST00000425207 252 ntBASIC3.39□□□□□ -1.87
SYPP08247 TOMM22P2-201ENST00000430735 237 ntBASIC3.39□□□□□ -1.87
SYPP08247 S100A11P2-201ENST00000467589 312 ntBASIC3.39□□□□□ -1.87
SYPP08247 UBE2DNL-203ENST00000474922 222 ntBASIC3.39□□□□□ -1.87
SYPP08247 RPS27AP9-201ENST00000477681 438 ntBASIC3.39□□□□□ -1.87
SYPP08247 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.39□□□□□ -1.87
SYPP08247 RNU1-117P-201ENST00000517041 158 ntBASIC3.39□□□□□ -1.87
SYPP08247 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.39□□□□□ -1.87
SYPP08247 AC025281.1-201ENST00000567026 265 ntBASIC3.39□□□□□ -1.87
SYPP08247 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.39□□□□□ -1.87
SYPP08247 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SYPP08247 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
SYPP08247 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SYPP08247 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SYPP08247 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SYPP08247 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
SYPP08247 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
SYPP08247 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.38□□□□□ -1.87
SYPP08247 Y_RNA.243-201ENST00000364481 109 ntBASIC3.38□□□□□ -1.87
SYPP08247 Y_RNA.510-201ENST00000384511 114 ntBASIC3.38□□□□□ -1.87
SYPP08247 SNORA26.5-201ENST00000391215 123 ntBASIC3.38□□□□□ -1.87
SYPP08247 AL159169.1-201ENST00000421119 127 ntBASIC3.38□□□□□ -1.87
SYPP08247 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 148 ms