Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RMST_3.1-201ENST00000611651 109 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.94□□□□□ -2.26
CPSF4O95639 FER-210ENST00000628534 558 ntTSL 5 BASIC0.94□□□□□ -2.26
CPSF4O95639 MIR6863-201ENST00000636112 90 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.94□□□□□ -2.26
CPSF4O95639 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CPSF4O95639 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
CPSF4O95639 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
CPSF4O95639 Y_RNA.123-201ENST00000363338 102 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU4-38P-201ENST00000364472 129 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU6-1286P-201ENST00000383871 107 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 SNORA22-201ENST00000383907 134 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 SNORA22C-201ENST00000384614 134 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 MIR520A-201ENST00000384862 85 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
CPSF4O95639 AL117342.1-201ENST00000404861 406 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 MIR1283-1-201ENST00000408494 87 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU6-648P-201ENST00000410190 107 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNA5SP494-201ENST00000410653 129 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU6-325P-201ENST00000411132 105 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.93□□□□□ -2.26
CPSF4O95639 MTCO1P21-201ENST00000416634 589 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC060773.1-201ENST00000421698 310 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 C8orf59P1-201ENST00000429930 303 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.93□□□□□ -2.26
CPSF4O95639 MRPS10P2-201ENST00000431226 381 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.93□□□□□ -2.26
CPSF4O95639 AC004386.2-201ENST00000441858 148 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AL359672.1-201ENST00000442302 409 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC098826.2-201ENST00000452011 651 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 snoU13.9-201ENST00000458927 103 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 snoU13.30-201ENST00000458951 104 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU6-1208P-201ENST00000459588 107 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 HMGN2P9-201ENST00000476875 229 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.93□□□□□ -2.26
CPSF4O95639 HMGN1P13-201ENST00000505795 138 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC091885.1-201ENST00000506658 268 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU6-405P-201ENST00000516637 110 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNU6-856P-201ENST00000516959 98 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 RNA5SP437-201ENST00000517249 129 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.93□□□□□ -2.26
CPSF4O95639 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.93□□□□□ -2.26
CPSF4O95639 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.93□□□□□ -2.26
CPSF4O95639 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.93□□□□□ -2.26
CPSF4O95639 MIR4422-201ENST00000581938 83 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC069114.2-201ENST00000604699 304 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC080078.3-201ENST00000605407 463 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC103810.9-201ENST00000606688 112 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC005562.2-201ENST00000618264 111 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AL158209.2-201ENST00000619266 216 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.93□□□□□ -2.26
CPSF4O95639 AC010615.1-201ENST00000594254 1764 ntBASIC0.93□□□□□ -2.26
CPSF4O95639 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.92□□□□□ -2.26
CPSF4O95639 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CPSF4O95639 RNU6-414P-201ENST00000363705 104 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 RNU6-271P-201ENST00000363858 105 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 RNU1-96P-201ENST00000364163 162 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 RNU6-259P-201ENST00000383999 107 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR514A2-201ENST00000385131 88 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR514A3-201ENST00000385132 88 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR548B-201ENST00000385247 97 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR300-201ENST00000401138 83 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR1267-201ENST00000408723 78 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 RNU2-66P-201ENST00000410650 161 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 ARL5AP1-201ENST00000418991 388 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.92□□□□□ -2.26
CPSF4O95639 USP9YP14-201ENST00000430663 563 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.92□□□□□ -2.26
CPSF4O95639 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.92□□□□□ -2.26
CPSF4O95639 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.92□□□□□ -2.26
CPSF4O95639 RPL26P26-201ENST00000480251 434 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 AC067942.3-201ENST00000512025 362 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 RNA5SP384-201ENST00000516615 116 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.92□□□□□ -2.26
CPSF4O95639 MIR4524B-201ENST00000581569 115 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR5006-201ENST00000583027 110 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 AP000942.3-201ENST00000603702 160 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 MIR3976-201ENST00000606807 139 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 Z99129.1-201ENST00000612510 255 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 FAM157A-202ENST00000615155 405 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 AC126177.8-201ENST00000618339 1015 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.92□□□□□ -2.26
CPSF4O95639 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6-1085P-201ENST00000363576 107 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6-1019P-201ENST00000364424 107 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6-968P-201ENST00000384076 107 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6-214P-201ENST00000384130 107 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU6-1042P-201ENST00000384204 107 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 SNORD116-1-201ENST00000384335 95 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 Y_RNA.481-201ENST00000384373 102 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 MIR521-1-201ENST00000384902 87 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU1-78P-201ENST00000391248 165 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 MTCO3P40-201ENST00000392516 676 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 EIF4E2P1-201ENST00000393781 255 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 CALM2P3-201ENST00000400429 449 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RNU2-7P-201ENST00000410794 178 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 AC004866.1-201ENST00000411748 78 ntBASIC0.91□□□□□ -2.26
CPSF4O95639 RPS26P42-201ENST00000413485 326 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms