Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 RN7SKP210-201ENST00000459176 261 ntBASIC1.91□□□□□ -2.1
SNX3O60493 AC091951.2-201ENST00000500762 203 ntBASIC1.91□□□□□ -2.1
SNX3O60493 RNU7-175P-201ENST00000515915 61 ntBASIC1.91□□□□□ -2.1
SNX3O60493 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.91□□□□□ -2.1
SNX3O60493 AP005660.1-201ENST00000522972 293 ntBASIC1.91□□□□□ -2.1
SNX3O60493 AC087441.2-201ENST00000529141 262 ntBASIC1.91□□□□□ -2.1
SNX3O60493 SNRPGP18-201ENST00000553000 214 ntBASIC1.91□□□□□ -2.1
SNX3O60493 AC027288.2-201ENST00000553028 243 ntBASIC1.91□□□□□ -2.1
SNX3O60493 AC074050.1-201ENST00000563247 211 ntBASIC1.91□□□□□ -2.1
SNX3O60493 MIR548S-201ENST00000581352 82 ntBASIC1.91□□□□□ -2.1
SNX3O60493 7SK.7-201ENST00000603504 247 ntBASIC1.91□□□□□ -2.1
SNX3O60493 SNRPGP20-201ENST00000604477 205 ntBASIC1.91□□□□□ -2.1
SNX3O60493 PISRT1.1-201ENST00000616930 107 ntBASIC1.91□□□□□ -2.1
SNX3O60493 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.9□□□□□ -2.11
SNX3O60493 RNU1-58P-201ENST00000362413 163 ntBASIC1.9□□□□□ -2.11
SNX3O60493 Y_RNA.142-201ENST00000363491 102 ntBASIC1.9□□□□□ -2.11
SNX3O60493 Y_RNA.319-201ENST00000365138 92 ntBASIC1.9□□□□□ -2.11
SNX3O60493 RNY3P14-201ENST00000384309 102 ntBASIC1.9□□□□□ -2.11
SNX3O60493 Y_RNA.490-201ENST00000384413 102 ntBASIC1.9□□□□□ -2.11
SNX3O60493 RNU6-160P-201ENST00000384591 107 ntBASIC1.9□□□□□ -2.11
SNX3O60493 RNU11-3P-201ENST00000391111 133 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AC139712.2-201ENST00000424302 339 ntBASIC1.9□□□□□ -2.11
SNX3O60493 HMGN2P3-201ENST00000433603 273 ntBASIC1.9□□□□□ -2.11
SNX3O60493 HMGN2P5-201ENST00000436882 273 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AC009237.7-201ENST00000447357 229 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.9□□□□□ -2.11
SNX3O60493 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.9□□□□□ -2.11
SNX3O60493 RNA5SP54-201ENST00000516951 92 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.9□□□□□ -2.11
SNX3O60493 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.9□□□□□ -2.11
SNX3O60493 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.9□□□□□ -2.11
SNX3O60493 AC104581.2-201ENST00000572227 430 ntBASIC1.9□□□□□ -2.11
SNX3O60493 MIR3122-201ENST00000577243 73 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.9□□□□□ -2.11
SNX3O60493 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AL590240.4-201ENST00000616908 390 ntBASIC1.9□□□□□ -2.11
SNX3O60493 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.9□□□□□ -2.11
SNX3O60493 AC131280.1-202ENST00000624067 4211 ntBASIC1.9□□□□□ -2.11
SNX3O60493 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
SNX3O60493 LINC02555-201ENST00000563933 1951 ntBASIC1.89□□□□□ -2.11
SNX3O60493 RNA5SP493-201ENST00000364115 91 ntBASIC1.89□□□□□ -2.11
SNX3O60493 RNU6-541P-201ENST00000384709 110 ntBASIC1.89□□□□□ -2.11
SNX3O60493 SNORA11.4-201ENST00000408823 129 ntBASIC1.89□□□□□ -2.11
SNX3O60493 RNU6-370P-201ENST00000411008 104 ntBASIC1.89□□□□□ -2.11
SNX3O60493 RNU6-1304P-201ENST00000411374 106 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AC096920.1-201ENST00000423991 241 ntBASIC1.89□□□□□ -2.11
SNX3O60493 USMG5P1-201ENST00000425964 177 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AL353997.1-201ENST00000432936 108 ntBASIC1.89□□□□□ -2.11
SNX3O60493 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.89□□□□□ -2.11
SNX3O60493 MTND4P18-201ENST00000447010 465 ntBASIC1.89□□□□□ -2.11
SNX3O60493 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.89□□□□□ -2.11
SNX3O60493 SCARNA16.2-201ENST00000516520 172 ntBASIC1.89□□□□□ -2.11
SNX3O60493 UBL5P4-201ENST00000562584 236 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.89□□□□□ -2.11
SNX3O60493 AP001094.1-201ENST00000579805 193 ntBASIC1.89□□□□□ -2.11
SNX3O60493 MIR3162-201ENST00000581818 82 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AL355802.3-201ENST00000607571 545 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AC130454.1-201ENST00000622948 401 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AL669831.3-213ENST00000636676 183 ntBASIC1.89□□□□□ -2.11
SNX3O60493 AP006437.1-201ENST00000641440 3685 ntBASIC1.89□□□□□ -2.11
SNX3O60493 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.89□□□□□ -2.11
SNX3O60493 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SNX3O60493 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.88□□□□□ -2.11
SNX3O60493 RNA5SP276-201ENST00000362580 94 ntBASIC1.88□□□□□ -2.11
SNX3O60493 RNU6-23P-201ENST00000363283 107 ntBASIC1.88□□□□□ -2.11
SNX3O60493 SNORD48-201ENST00000364953 64 ntBASIC1.88□□□□□ -2.11
SNX3O60493 RNA5SP465-201ENST00000391195 109 ntBASIC1.88□□□□□ -2.11
SNX3O60493 AL355497.1-201ENST00000406262 551 ntBASIC1.88□□□□□ -2.11
SNX3O60493 MIR1283-1-201ENST00000408494 87 ntBASIC1.88□□□□□ -2.11
SNX3O60493 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.88□□□□□ -2.11
SNX3O60493 RNU6-507P-201ENST00000516045 100 ntBASIC1.88□□□□□ -2.11
SNX3O60493 RNU6-875P-201ENST00000516488 106 ntBASIC1.88□□□□□ -2.11
SNX3O60493 RNU6-1198P-201ENST00000516904 67 ntBASIC1.88□□□□□ -2.11
SNX3O60493 RRN3P3-201ENST00000549207 578 ntBASIC1.88□□□□□ -2.11
SNX3O60493 AC024614.2-201ENST00000577584 372 ntBASIC1.88□□□□□ -2.11
SNX3O60493 MIR3169-201ENST00000578032 83 ntBASIC1.88□□□□□ -2.11
SNX3O60493 MIR5701-3-201ENST00000578890 82 ntBASIC1.88□□□□□ -2.11
SNX3O60493 MIR5701-1-201ENST00000585138 82 ntBASIC1.88□□□□□ -2.11
SNX3O60493 SNRPGP19-201ENST00000603826 189 ntBASIC1.88□□□□□ -2.11
SNX3O60493 AC113139.1-201ENST00000605049 239 ntBASIC1.88□□□□□ -2.11
SNX3O60493 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.88□□□□□ -2.11
SNX3O60493 Y_RNA.783-201ENST00000613546 102 ntBASIC1.88□□□□□ -2.11
SNX3O60493 MIR5701-2-201ENST00000615634 82 ntBASIC1.88□□□□□ -2.11
SNX3O60493 ZNF702P-202ENST00000434269 1966 ntBASIC1.87□□□□□ -2.11
SNX3O60493 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
SNX3O60493 RNY1P16-201ENST00000363063 111 ntBASIC1.87□□□□□ -2.11
SNX3O60493 RNU6-873P-201ENST00000363833 107 ntBASIC1.87□□□□□ -2.11
SNX3O60493 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.87□□□□□ -2.11
SNX3O60493 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
SNX3O60493 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
SNX3O60493 MIR300-201ENST00000401138 83 ntBASIC1.87□□□□□ -2.11
SNX3O60493 MIR320B2-201ENST00000408479 138 ntBASIC1.87□□□□□ -2.11
SNX3O60493 MTND3P23-201ENST00000431980 347 ntBASIC1.87□□□□□ -2.11
SNX3O60493 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.87□□□□□ -2.11
SNX3O60493 MTCO1P44-201ENST00000441935 243 ntBASIC1.87□□□□□ -2.11
SNX3O60493 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.87□□□□□ -2.11
SNX3O60493 AC007395.1-201ENST00000451333 677 ntBASIC1.87□□□□□ -2.11
SNX3O60493 AC010531.2-201ENST00000465012 153 ntBASIC1.87□□□□□ -2.11
SNX3O60493 AP000870.1-201ENST00000472927 406 ntBASIC1.87□□□□□ -2.11
SNX3O60493 RNU6-277P-201ENST00000516272 106 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms