Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SNORA48.8-201ENST00000391324 134 ntBASIC3.14□□□□□ -1.91
CBX4O00257 RNU6-1203P-201ENST00000410703 110 ntBASIC3.14□□□□□ -1.91
CBX4O00257 SNORD127-201ENST00000458892 86 ntBASIC3.14□□□□□ -1.91
CBX4O00257 RNU6-1132P-201ENST00000459214 107 ntBASIC3.14□□□□□ -1.91
CBX4O00257 AC092185.1-201ENST00000491371 97 ntBASIC3.14□□□□□ -1.91
CBX4O00257 RPS23P5-201ENST00000495419 428 ntBASIC3.14□□□□□ -1.91
CBX4O00257 RNU7-110P-201ENST00000516891 62 ntBASIC3.14□□□□□ -1.91
CBX4O00257 DEFB131C-201ENST00000528817 165 ntBASIC3.14□□□□□ -1.91
CBX4O00257 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.14□□□□□ -1.91
CBX4O00257 SNORD113-5-201ENST00000607261 78 ntBASIC3.14□□□□□ -1.91
CBX4O00257 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.14□□□□□ -1.91
CBX4O00257 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CBX4O00257 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CBX4O00257 MIR22-201ENST00000362190 85 ntBASIC3.13□□□□□ -1.91
CBX4O00257 RNU4-90P-201ENST00000362773 141 ntBASIC3.13□□□□□ -1.91
CBX4O00257 snoU2_19.2-201ENST00000363024 80 ntBASIC3.13□□□□□ -1.91
CBX4O00257 Y_RNA.307-201ENST00000365022 117 ntBASIC3.13□□□□□ -1.91
CBX4O00257 Y_RNA.489-201ENST00000384410 101 ntBASIC3.13□□□□□ -1.91
CBX4O00257 MIR215-201ENST00000384858 110 ntBASIC3.13□□□□□ -1.91
CBX4O00257 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.13□□□□□ -1.91
CBX4O00257 CYP2C59P-201ENST00000457790 269 ntBASIC3.13□□□□□ -1.91
CBX4O00257 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.13□□□□□ -1.91
CBX4O00257 SEPT14P8-201ENST00000508026 178 ntBASIC3.13□□□□□ -1.91
CBX4O00257 RNU5F-4P-201ENST00000516581 114 ntBASIC3.13□□□□□ -1.91
CBX4O00257 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.13□□□□□ -1.91
CBX4O00257 AC023157.2-201ENST00000540596 141 ntBASIC3.13□□□□□ -1.91
CBX4O00257 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.13□□□□□ -1.91
CBX4O00257 MIR4672-201ENST00000583126 81 ntBASIC3.13□□□□□ -1.91
CBX4O00257 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.13□□□□□ -1.91
CBX4O00257 AC006023.1-201ENST00000603944 259 ntBASIC3.13□□□□□ -1.91
CBX4O00257 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CBX4O00257 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
CBX4O00257 AC000403.1-201ENST00000613696 3585 ntBASIC3.12□□□□□ -1.91
CBX4O00257 RNA5SP383-201ENST00000362934 120 ntBASIC3.12□□□□□ -1.91
CBX4O00257 SNORA71.1-201ENST00000364523 117 ntBASIC3.12□□□□□ -1.91
CBX4O00257 Y_RNA.350-201ENST00000365409 98 ntBASIC3.12□□□□□ -1.91
CBX4O00257 Y_RNA.415-201ENST00000384012 112 ntBASIC3.12□□□□□ -1.91
CBX4O00257 RNU6-1310P-201ENST00000384153 107 ntBASIC3.12□□□□□ -1.91
CBX4O00257 SNORA54-201ENST00000384281 123 ntBASIC3.12□□□□□ -1.91
CBX4O00257 FO393413.1-201ENST00000402892 195 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AC107083.1-201ENST00000439643 279 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.12□□□□□ -1.91
CBX4O00257 RNU6-107P-201ENST00000516643 102 ntBASIC3.12□□□□□ -1.91
CBX4O00257 RNU1-117P-201ENST00000517041 158 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AC068657.1-201ENST00000520807 306 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.12□□□□□ -1.91
CBX4O00257 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.12□□□□□ -1.91
CBX4O00257 MIR4423-201ENST00000580922 80 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AC068205.3-201ENST00000636385 468 ntBASIC3.12□□□□□ -1.91
CBX4O00257 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.12□□□□□ -1.91
CBX4O00257 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CBX4O00257 MTND5P6-201ENST00000422338 1798 ntBASIC3.12□□□□□ -1.91
CBX4O00257 AC092435.3-201ENST00000565538 3654 ntBASIC3.12□□□□□ -1.91
CBX4O00257 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CBX4O00257 RNU6-1175P-201ENST00000365200 107 ntBASIC3.11□□□□□ -1.91
CBX4O00257 RNA5SP240-201ENST00000365355 128 ntBASIC3.11□□□□□ -1.91
CBX4O00257 Y_RNA.570-201ENST00000384750 101 ntBASIC3.11□□□□□ -1.91
CBX4O00257 RN7SKP220-201ENST00000410611 288 ntBASIC3.11□□□□□ -1.91
CBX4O00257 RNU2-38P-201ENST00000410856 79 ntBASIC3.11□□□□□ -1.91
CBX4O00257 AC004866.1-201ENST00000411748 78 ntBASIC3.11□□□□□ -1.91
CBX4O00257 AL513477.1-202ENST00000417061 214 ntBASIC3.11□□□□□ -1.91
CBX4O00257 RAB28P5-201ENST00000427490 651 ntBASIC3.11□□□□□ -1.91
CBX4O00257 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.11□□□□□ -1.91
CBX4O00257 RPL39P38-201ENST00000467018 153 ntBASIC3.11□□□□□ -1.91
CBX4O00257 RNU6-496P-201ENST00000516145 99 ntBASIC3.11□□□□□ -1.91
CBX4O00257 RNA5SP380-201ENST00000517190 98 ntBASIC3.11□□□□□ -1.91
CBX4O00257 MIR3616-201ENST00000584070 92 ntBASIC3.11□□□□□ -1.91
CBX4O00257 AC093732.2-201ENST00000607950 274 ntBASIC3.11□□□□□ -1.91
CBX4O00257 AC099778.2-201ENST00000610904 211 ntBASIC3.11□□□□□ -1.91
CBX4O00257 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.11□□□□□ -1.91
CBX4O00257 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.11□□□□□ -1.91
CBX4O00257 SNORA50A-202ENST00000629536 136 ntBASIC3.11□□□□□ -1.91
CBX4O00257 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CBX4O00257 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CBX4O00257 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.11□□□□□ -1.91
CBX4O00257 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CBX4O00257 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.1□□□□□ -1.91
CBX4O00257 AL391987.6-201ENST00000305671 199 ntBASIC3.1□□□□□ -1.91
CBX4O00257 Y_RNA.14-201ENST00000362415 103 ntBASIC3.1□□□□□ -1.91
CBX4O00257 RNU6-944P-201ENST00000364023 107 ntBASIC3.1□□□□□ -1.91
CBX4O00257 Y_RNA.518-201ENST00000384552 113 ntBASIC3.1□□□□□ -1.91
CBX4O00257 RNA5SP475-201ENST00000410568 110 ntBASIC3.1□□□□□ -1.91
CBX4O00257 RNU2-63P-201ENST00000410792 194 ntBASIC3.1□□□□□ -1.91
CBX4O00257 ELOCP21-201ENST00000412558 336 ntBASIC3.1□□□□□ -1.91
CBX4O00257 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.1□□□□□ -1.91
CBX4O00257 AC022018.1-201ENST00000430685 241 ntBASIC3.1□□□□□ -1.91
CBX4O00257 AC090515.1-201ENST00000465295 476 ntBASIC3.1□□□□□ -1.91
CBX4O00257 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.1□□□□□ -1.91
CBX4O00257 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.1□□□□□ -1.91
CBX4O00257 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.1□□□□□ -1.91
CBX4O00257 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.1□□□□□ -1.91
CBX4O00257 SDR42E1P4-201ENST00000620894 481 ntBASIC3.1□□□□□ -1.91
CBX4O00257 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.1□□□□□ -1.91
CBX4O00257 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.1□□□□□ -1.91
CBX4O00257 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.09□□□□□ -1.91
CBX4O00257 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.09□□□□□ -1.91
CBX4O00257 AC138915.1-201ENST00000565427 1685 ntBASIC3.09□□□□□ -1.91
CBX4O00257 MIR148B-201ENST00000362252 99 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RNU6-290P-201ENST00000365212 101 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms