Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 RNA5SP121-201ENST00000516537 101 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1178P-201ENST00000516674 107 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-922P-201ENST00000516753 99 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC004812.1-201ENST00000540773 146 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC103996.1-201ENST00000555468 102 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 PRELID3BP2-201ENST00000605362 201 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC009229.3-201ENST00000608056 282 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC007742.2-201ENST00000618226 398 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR8054-201ENST00000620877 86 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AL078595.3-201ENST00000623815 1166 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 Y_RNA.480-201ENST00000384364 102 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-342P-201ENST00000384521 104 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR489-201ENST00000384923 84 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1093P-201ENST00000391194 107 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR942-201ENST00000401111 86 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC090960.1-201ENST00000421072 306 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AL035398.1-201ENST00000430869 322 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU7-21P-201ENST00000459430 62 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 Y_RNA.672-201ENST00000516289 104 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC090572.1-201ENST00000519251 160 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC016256.1-201ENST00000547971 354 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AL391840.1-201ENST00000571144 367 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AP000811.1-201ENST00000603803 651 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AL031281.1-201ENST00000604049 488 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC018645.2-201ENST00000609151 472 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AL157392.4-201ENST00000609756 345 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC091304.9-201ENST00000612091 226 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 TCL6_2.1-201ENST00000615162 119 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR7111-201ENST00000619751 72 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 AC022418.1-201ENST00000624118 445 ntBASIC0.35□□□□□ -2.35
TRAV1-1A0A0B4J248 MTND4P5-201ENST00000435821 1374 ntBASIC0.34□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU5F-6P-201ENST00000362979 116 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 Y_RNA.112-201ENST00000363250 102 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 RNU6-501P-201ENST00000364072 100 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 RNU6-827P-201ENST00000365553 106 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 MIR10B-201ENST00000385011 110 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 MTND3P17-201ENST00000416968 344 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AL365184.2-201ENST00000431139 435 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC079382.1-201ENST00000493346 557 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 HMGB1P29-201ENST00000505659 499 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 RNU4-54P-201ENST00000516428 129 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 RNU6-1069P-201ENST00000516612 133 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AP003072.2-201ENST00000527756 676 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC090049.2-201ENST00000550377 109 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 MTCO3P23-201ENST00000561363 289 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 PCMTD1P2-201ENST00000565017 355 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 MIR4775-201ENST00000581168 75 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC011712.1-201ENST00000588959 234 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC068790.6-201ENST00000602558 258 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC080078.2-201ENST00000603766 501 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC005562.2-201ENST00000618264 111 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 AC243829.3-201ENST00000622177 108 ntBASIC0.34□□□□□ -2.36
TRAV1-1A0A0B4J248 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 RNY1P12-201ENST00000364251 105 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 SNORA20.2-201ENST00000383922 131 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 MIR660-201ENST00000385235 97 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 RNU1-139P-201ENST00000391307 165 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 CDK8P2-201ENST00000415020 547 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC016909.1-201ENST00000415916 166 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC114737.2-201ENST00000421583 173 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 MTCO2P23-201ENST00000425216 680 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AL512286.1-201ENST00000439244 400 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 NFU1P2-201ENST00000448700 469 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 RNU6-1132P-201ENST00000459214 107 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC113410.1-201ENST00000505029 247 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC079140.5-201ENST00000507882 310 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AK3P2-201ENST00000507976 429 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC092436.3-201ENST00000511788 257 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC022878.1-201ENST00000530684 149 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC026470.2-201ENST00000561492 181 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC004584.2-201ENST00000570407 410 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC005771.1-201ENST00000585581 349 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC073349.3-201ENST00000617616 186 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AL603839.4-201ENST00000624658 1005 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 AC006927.3-201ENST00000638789 384 ntBASIC0.33□□□□□ -2.36
TRAV1-1A0A0B4J248 ELL2P3-201ENST00000457883 1602 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms