Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL078596.1-201ENST00000624856 447 ntBASIC2.7□□□□□ -1.98
VPS4AQ9UN37 AC096644.4-201ENST00000563417 2912 ntBASIC2.7□□□□□ -1.98
VPS4AQ9UN37 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.319-201ENST00000365138 92 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 SNORD14.1-201ENST00000365609 90 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.380-201ENST00000365663 111 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 RNY3P4-201ENST00000384428 101 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.527-201ENST00000384573 102 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 MIR487A-201ENST00000385009 80 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 MIR10B-201ENST00000385011 110 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AL590004.2-201ENST00000404787 371 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 U6atac.2-201ENST00000408644 118 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 HMGB3P2-201ENST00000411913 584 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 MTCO3P19-201ENST00000415864 321 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AC114482.1-201ENST00000418010 247 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 RNU6-1114P-201ENST00000516022 107 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 RNU6-1198P-201ENST00000516904 67 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 RNA5SP54-201ENST00000516951 92 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 RN7SKP40-201ENST00000517211 242 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AC040926.1-201ENST00000530195 238 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 HSBP1P1-201ENST00000555205 166 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 MIR3605-201ENST00000583214 100 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AL356575.1-201ENST00000603008 283 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AL021879.1-201ENST00000611756 288 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 AL132822.1-201ENST00000617063 513 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 MIR7157-201ENST00000635801 60 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 MIR7515-201ENST00000637837 67 ntBASIC2.69□□□□□ -1.98
VPS4AQ9UN37 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
VPS4AQ9UN37 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 ZNF72P-201ENST00000425869 1908 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 BX322639.1-202ENST00000423987 2213 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 RNU6-222P-201ENST00000362438 107 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.27-201ENST00000362540 103 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 RNU6-1301P-201ENST00000362724 104 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 RNU6-281P-201ENST00000384212 103 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 RNU6-378P-201ENST00000384324 107 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.526-201ENST00000384572 110 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 RNU6-1105P-201ENST00000384774 107 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 MIR504-201ENST00000385065 83 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 MIR1252-201ENST00000408861 65 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC010095.1-201ENST00000443543 144 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC096638.1-201ENST00000444678 216 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 SCARNA3-201ENST00000517097 143 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC027176.1-201ENST00000560204 514 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 AL355297.3-201ENST00000604082 446 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.68□□□□□ -1.98
VPS4AQ9UN37 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS4AQ9UN37 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 MIR26A1-201ENST00000362205 77 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 RNU4-56P-201ENST00000364700 142 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 SNORA63.7-201ENST00000365579 123 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.389-201ENST00000383924 113 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.424-201ENST00000384063 103 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 RNU6-708P-201ENST00000384217 107 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 RPL30P4-201ENST00000429309 333 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC092427.1-202ENST00000430569 476 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC073910.1-201ENST00000445047 438 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 FCF1P4-201ENST00000448326 183 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 SNORD109B-201ENST00000458961 67 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 SNORD109A-201ENST00000459128 67 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC008413.1-201ENST00000511864 177 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.715-201ENST00000517082 110 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC091144.1-201ENST00000519573 138 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AL138963.2-201ENST00000605137 226 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 AC092593.1-201ENST00000515413 1815 ntBASIC2.67□□□□□ -1.98
VPS4AQ9UN37 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
VPS4AQ9UN37 SET-203ENST00000372688 801 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS4AQ9UN37 RNU6-318P-201ENST00000384283 103 ntBASIC2.66□□□□□ -1.98
VPS4AQ9UN37 Y_RNA.551-201ENST00000384661 102 ntBASIC2.66□□□□□ -1.98
VPS4AQ9UN37 RNU6-101P-201ENST00000410323 104 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 146.5 ms