Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 MIR5006-201ENST00000583027 110 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 AC060780.3-201ENST00000589464 80 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 SNRPGP20-201ENST00000604477 205 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS28Q9UK41 MTND4P5-201ENST00000435821 1374 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 Y_RNA.132-201ENST00000363421 102 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 SNORA48.1-201ENST00000390879 135 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 RNA5SP212-201ENST00000391223 107 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 RNA5SP338-201ENST00000410495 85 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 Y_RNA.619-201ENST00000410951 90 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS28Q9UK41 RNU1-54P-201ENST00000517181 120 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.13□□□□□ -2.07
VPS28Q9UK41 AC005786.1-201ENST00000588553 154 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.13□□□□□ -2.07
VPS28Q9UK41 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.13□□□□□ -2.07
VPS28Q9UK41 MIR340-201ENST00000362125 95 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 SNORD115-32-201ENST00000364079 82 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 RNA5SP138-201ENST00000365098 114 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS28Q9UK41 AL121890.1-201ENST00000435457 205 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 MTATP6P13-201ENST00000438531 667 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 AC009237.7-201ENST00000447357 229 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 YWHAEP4-201ENST00000505390 198 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS28Q9UK41 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.12□□□□□ -2.07
VPS28Q9UK41 MRPS17P9-201ENST00000511924 393 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 RNU1-40P-201ENST00000516816 164 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 RNU1-97P-201ENST00000516872 164 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS28Q9UK41 MIR4790-201ENST00000577799 79 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 AC008749.1-201ENST00000597650 306 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.12□□□□□ -2.07
VPS28Q9UK41 AC092794.1-201ENST00000612734 582 ntBASIC2.12□□□□□ -2.07
VPS28Q9UK41 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 RNU6-545P-201ENST00000362681 104 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 Y_RNA.301-201ENST00000364990 103 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 U8.10-201ENST00000384260 133 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 MIR1283-1-201ENST00000408494 87 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
VPS28Q9UK41 AC010095.1-201ENST00000443543 144 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 RPL23AP7-203ENST00000449021 469 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AL021397.1-201ENST00000451806 248 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 RNA5SP57-201ENST00000459463 123 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 RNU6-329P-201ENST00000459618 107 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AC010531.2-201ENST00000465012 153 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AC069439.1-201ENST00000494739 167 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 RNU6-358P-201ENST00000516564 75 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 RNA5SP54-201ENST00000516951 92 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 MTND4LP26-201ENST00000518144 282 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 MIR4753-201ENST00000585119 83 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 AL096840.1-201ENST00000603287 93 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 BX322639.1-202ENST00000423987 2213 ntBASIC2.11□□□□□ -2.07
VPS28Q9UK41 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.11□□□□□ -2.07
VPS28Q9UK41 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
VPS28Q9UK41 AL359851.1-201ENST00000569460 4997 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VPS28Q9UK41 Y_RNA.72-201ENST00000362894 103 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 RNU6-596P-201ENST00000365395 98 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 MIR32-201ENST00000384965 70 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 AL079342.1-201ENST00000401460 267 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VPS28Q9UK41 MTCO1P44-201ENST00000441935 243 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 AL357134.1-201ENST00000445848 426 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 MTCO3P8-201ENST00000453691 755 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 snoU13.26-201ENST00000459452 105 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 SUMO2P18-201ENST00000518873 252 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 MIR4742-201ENST00000581069 85 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 7SK.7-201ENST00000603504 247 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC122108.2-201ENST00000611946 526 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 Y_RNA.783-201ENST00000613546 102 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC091932.3-201ENST00000624223 323 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.1□□□□□ -2.07
VPS28Q9UK41 KPNA2P1-201ENST00000458289 1591 ntBASIC2.1□□□□□ -2.07
VPS28Q9UK41 ZNF204P-201ENST00000416749 2397 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 SNORD114-1-201ENST00000362705 72 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 RNU4-52P-201ENST00000384209 138 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 MIR549A-201ENST00000385268 96 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 MIR676-201ENST00000390702 67 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 AL356432.1-201ENST00000405809 419 ntBASIC2.09□□□□□ -2.07
VPS28Q9UK41 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms