Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC023050.3-201ENST00000541142 333 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.88□□□□□ -2.27
USP42Q9H9J4 AC090517.1-201ENST00000569307 266 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 TMF1P1-201ENST00000576058 373 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 MIR4775-201ENST00000581168 75 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 BNIP3P39-201ENST00000601077 554 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 AC078795.3-201ENST00000602913 472 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 AL136370.1-201ENST00000608166 691 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 AC008147.4-201ENST00000617570 1204 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 U6.114-201ENST00000636407 96 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 RNU6-418P-201ENST00000384035 107 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.87□□□□□ -2.27
USP42Q9H9J4 AL356776.1-201ENST00000406574 447 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 Y_RNA.598-201ENST00000410480 95 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 MTCO1P21-201ENST00000416634 589 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC073614.1-201ENST00000438690 650 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC007547.1-201ENST00000462177 490 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC117454.1-201ENST00000491120 168 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC091874.1-201ENST00000511402 339 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.87□□□□□ -2.27
USP42Q9H9J4 SCARNA1-201ENST00000517138 166 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.87□□□□□ -2.27
USP42Q9H9J4 MIR3664-201ENST00000579074 99 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 BNIP3P16-201ENST00000589779 534 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 NIFKP6-201ENST00000598115 845 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AL022345.2-201ENST00000606307 135 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC004223.4-201ENST00000612426 332 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC016597.2-201ENST00000613256 341 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC012676.2-201ENST00000619258 186 ntBASIC0.87□□□□□ -2.27
USP42Q9H9J4 AC008163.1-202ENST00000636004 2889 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 U3.4-201ENST00000363352 213 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 Y_RNA.504-201ENST00000384481 104 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 MIR515-2-201ENST00000384883 83 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 MIR515-1-201ENST00000384884 83 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 MIR194-1-201ENST00000384892 85 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 SNORA26.3-201ENST00000391119 136 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 RPS29P13-201ENST00000402041 169 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 AL117339.3-201ENST00000418733 162 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 MTCO2P34-201ENST00000421994 607 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 AC078809.1-201ENST00000427601 140 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 USP9YP14-201ENST00000430663 563 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.86□□□□□ -2.27
USP42Q9H9J4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.86□□□□□ -2.27
USP42Q9H9J4 SNAP23P1-201ENST00000433229 246 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.86□□□□□ -2.27
USP42Q9H9J4 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.86□□□□□ -2.27
USP42Q9H9J4 AC016925.1-201ENST00000458303 298 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.86□□□□□ -2.27
USP42Q9H9J4 AC005178.1-201ENST00000508392 440 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 MTCO3P7-201ENST00000510008 774 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 SNORD27.1-201ENST00000516319 72 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 Vault.3-201ENST00000516676 95 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 EIF4A1P12-201ENST00000551910 141 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.86□□□□□ -2.27
USP42Q9H9J4 AC013244.2-201ENST00000603396 103 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 AL603839.4-201ENST00000624658 1005 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 AL589743.1-201ENST00000551932 2712 ntBASIC0.86□□□□□ -2.27
USP42Q9H9J4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNA5SP347-201ENST00000362445 119 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNU6-545P-201ENST00000362681 104 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNU6-552P-201ENST00000362869 119 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNU6-1287P-201ENST00000362914 107 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNY4P34-201ENST00000364779 95 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNU6-1060P-201ENST00000384664 107 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 MIR1-2-201ENST00000384961 85 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
USP42Q9H9J4 RNU2-8P-201ENST00000410727 190 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 RPS3AP3-201ENST00000411933 242 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.85□□□□□ -2.27
USP42Q9H9J4 AC009961.2-201ENST00000435771 251 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.85□□□□□ -2.27
USP42Q9H9J4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.85□□□□□ -2.27
USP42Q9H9J4 ACA64.5-201ENST00000516207 127 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 SCARNA16.2-201ENST00000516520 172 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 SUMO2P16-201ENST00000519475 264 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 AP003072.2-201ENST00000527756 676 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 AL442163.3-201ENST00000554110 156 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.85□□□□□ -2.27
USP42Q9H9J4 CTHRC1P1-201ENST00000605383 469 ntBASIC0.85□□□□□ -2.27
USP42Q9H9J4 MTND4P4-201ENST00000439033 1366 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
USP42Q9H9J4 RNU6-1029P-201ENST00000384109 107 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 SNORA29-201ENST00000384183 140 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 SNORA36A-201ENST00000384221 132 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 MIR208B-201ENST00000401172 77 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.84□□□□□ -2.28
USP42Q9H9J4 RPL23AP95-201ENST00000426806 265 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 AL133396.1-201ENST00000432048 687 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 AL031274.1-201ENST00000450334 232 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 AC011406.1-201ENST00000512440 370 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 SNORA70.22-201ENST00000517160 124 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 SNORA25.17-201ENST00000517184 124 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 AC109479.2-201ENST00000517842 174 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 AL021879.1-201ENST00000611756 288 ntBASIC0.84□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms