Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AL591034.2-201ENST00000402839 359 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AL355497.1-201ENST00000406262 551 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 RNA5SP390-201ENST00000410191 113 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 MTCO2P27-201ENST00000420740 428 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 USMG5P1-201ENST00000425964 177 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AC003989.2-201ENST00000440224 169 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 OSTCP8-201ENST00000445117 448 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AC022447.4-201ENST00000504053 364 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 RNU1-40P-201ENST00000516816 164 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 RNU1-97P-201ENST00000516872 164 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AC010186.2-204ENST00000537668 439 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 SNRPGP19-201ENST00000603826 189 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AC080078.3-201ENST00000605407 463 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AL109809.4-201ENST00000603520 2185 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 MIR369-201ENST00000362155 70 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1115P-201ENST00000362490 106 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.164-201ENST00000363709 102 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RNU6-933P-201ENST00000384424 107 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 MIR9-3-201ENST00000385084 90 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 MIR147B-201ENST00000390185 80 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RPL39P29-201ENST00000447779 157 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RNU6-717P-201ENST00000459076 104 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 MIR2053-201ENST00000459295 91 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RPL30P1-201ENST00000488676 339 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AC104564.1-201ENST00000493028 407 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AC108729.3-201ENST00000513484 108 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1053P-201ENST00000515930 101 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 SNORA25.11-201ENST00000515935 105 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AC018889.1-201ENST00000605372 397 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AL080274.1-201ENST00000605565 220 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 SNORD14A-201ENST00000606526 91 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 RNU6-91P-201ENST00000607774 107 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AC024581.2-201ENST00000619986 252 ntBASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.13□□□□□ -2.07
UPF3AQ9H1J1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.5-201ENST00000362334 102 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.31-201ENST00000362574 102 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 RNU1-72P-201ENST00000362976 153 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.395-201ENST00000383945 109 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1040P-201ENST00000383974 107 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 SNORA51.11-201ENST00000384442 131 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.496-201ENST00000384444 101 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 EIF4EP2-201ENST00000422816 654 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AIMP1P2-201ENST00000425294 312 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 IPO7P1-201ENST00000442031 636 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AC112771.1-201ENST00000463581 102 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 ACA59.1-201ENST00000515966 143 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AC079598.5-201ENST00000547460 117 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 ANP32BP3-201ENST00000559213 706 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AC020661.2-201ENST00000560114 134 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 MIR5701-3-201ENST00000578890 82 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 MIR5701-1-201ENST00000585138 82 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AL078605.1-201ENST00000603529 500 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 MIR5701-2-201ENST00000615634 82 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 PISRT1.1-201ENST00000616930 107 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 AC099654.10-201ENST00000640395 161 ntBASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
UPF3AQ9H1J1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 MTND5P9-201ENST00000503854 1755 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC009541.1-201ENST00000438279 2662 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1010P-201ENST00000362757 107 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1141P-201ENST00000364520 107 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNA5SP190-201ENST00000365222 118 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.431-201ENST00000384086 102 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNU4-52P-201ENST00000384209 138 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1222P-201ENST00000384615 107 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNU2-23P-201ENST00000410545 195 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 MRPS18CP6-201ENST00000423587 223 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC008267.5-201ENST00000424928 265 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AL353997.1-201ENST00000432936 108 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 Z82188.1-201ENST00000436709 154 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC025033.1-201ENST00000463883 194 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 SNRPGP7-201ENST00000469016 106 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AF186996.7-201ENST00000492781 209 ntBASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.11□□□□□ -2.07
UPF3AQ9H1J1 RNU6-470P-201ENST00000515954 104 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms