Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-968P-201ENST00000384076 107 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 RNU6-483P-201ENST00000384088 108 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 RNU6-1235P-201ENST00000384559 107 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 RNU6-296P-201ENST00000384608 107 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 C8orf59P1-201ENST00000429930 303 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 SEPT14P3-201ENST00000439401 183 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 AL732372.2-207ENST00000445840 183 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 SEPT14P2-201ENST00000453405 183 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 RNU6-498P-201ENST00000459468 107 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 AC105313.1-201ENST00000509121 353 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 SEPT14P4-201ENST00000513445 186 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 RNU6-314P-201ENST00000516574 104 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 FO082796.1-201ENST00000523795 183 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 AC092954.2-201ENST00000609103 430 ntBASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.35□□□□□ -2.03
CHMP4AQ9BY43 SNORA29-201ENST00000384183 140 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 MRPS10P2-201ENST00000431226 381 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 RPL26P26-201ENST00000480251 434 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 AC019235.1-201ENST00000503847 207 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 RNU6-548P-201ENST00000517083 115 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 MIR3935-201ENST00000583472 104 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 AC097065.2-201ENST00000608159 533 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 MIR6845-201ENST00000613182 61 ntBASIC2.34□□□□□ -2.03
CHMP4AQ9BY43 OR4G1P-203ENST00000641984 1631 ntBASIC2.34□□□□□ -2.04
CHMP4AQ9BY43 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 Y_RNA.231-201ENST00000364358 102 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 SNORA16.1-201ENST00000364597 132 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 SNORA18.2-201ENST00000383865 132 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 SNORA12.2-201ENST00000391040 156 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 MTND3P9-201ENST00000429526 346 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AL591806.2-201ENST00000433122 173 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AC009237.7-201ENST00000447357 229 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AC007215.1-201ENST00000464893 276 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AC083904.1-201ENST00000487828 231 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 TRBVA-201ENST00000498804 316 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AC091435.1-201ENST00000505442 584 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AL162413.1-201ENST00000603198 110 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AC099654.12-201ENST00000639868 649 ntBASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CHMP4AQ9BY43 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 Y_RNA.41-201ENST00000362646 102 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 RNU1-96P-201ENST00000364163 162 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 MIR514A2-201ENST00000385131 88 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 MIR514A3-201ENST00000385132 88 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 SUMO2P12-201ENST00000405924 140 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 OR2AQ1P-201ENST00000451972 200 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 RNA5SP445-201ENST00000515889 115 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 RNU6-506P-201ENST00000516553 94 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 RNU6-1332P-201ENST00000516666 104 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 AK6P1-201ENST00000540219 478 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 MIR3683-201ENST00000580847 82 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 AC010525.2-201ENST00000590920 195 ntBASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CHMP4AQ9BY43 RNU6-1317P-201ENST00000364582 104 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 RNU6ATAC2P-201ENST00000387943 126 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 AL590002.1-201ENST00000406554 418 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 RNU2-20P-201ENST00000410425 191 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 AC015712.3-201ENST00000559380 164 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 RNU6-89P-201ENST00000606519 100 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 AF250324.2-201ENST00000608299 610 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 AC015540.1-201ENST00000615828 501 ntBASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
CHMP4AQ9BY43 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 SNORA63D-201ENST00000364359 132 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 Y_RNA.373-201ENST00000365600 103 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 RNU6-877P-201ENST00000383868 107 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 RNU6-784P-201ENST00000384330 106 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 ERLEC1P1-201ENST00000433806 578 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 MTCO2P7-201ENST00000446518 666 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 AMD1P1-201ENST00000457220 922 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 RNU6-1198P-201ENST00000516904 67 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 MRPS36P4-201ENST00000534436 298 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 MIR4524B-201ENST00000581569 115 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 MIR5006-201ENST00000583027 110 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 AC012557.2-201ENST00000605919 418 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 DISC2.1-201ENST00000612827 205 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 AC068137.3-201ENST00000639191 341 ntBASIC2.3□□□□□ -2.04
CHMP4AQ9BY43 BX322639.1-202ENST00000423987 2213 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms