Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA18.2-201ENST00000383865 132 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 SNORA51.11-201ENST00000384442 131 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 SNORA75.6-201ENST00000391318 127 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC027124.2-201ENST00000428249 105 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC009238.1-201ENST00000442165 424 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC009237.6-201ENST00000446969 424 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 ELOCP24-201ENST00000456370 334 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 ANXA2P1-201ENST00000505539 926 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC022493.2-201ENST00000506122 481 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC234781.5-201ENST00000508429 271 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 CYCSP26-201ENST00000534107 320 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC018630.3-201ENST00000542637 96 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AP002770.2-201ENST00000543613 532 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 UBL5P4-201ENST00000562584 236 ntBASIC1.98□□□□□ -2.09
NKX3-1Q99801 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.98□□□□□ -2.09
NKX3-1Q99801 AC006026.1-201ENST00000444025 1803 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6-1159P-201ENST00000362933 107 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6-26P-201ENST00000383985 107 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6-17P-201ENST00000384245 107 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6-18P-201ENST00000384527 107 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 Y_RNA.579-201ENST00000390939 94 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 MIR1294-201ENST00000408503 142 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC004866.1-201ENST00000411748 78 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 CBX3P6-201ENST00000430257 527 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC018634.1-201ENST00000437554 401 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AL035666.1-201ENST00000446195 348 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RN7SL636P-201ENST00000497504 294 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU7-175P-201ENST00000515915 61 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6-470P-201ENST00000515954 104 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNA5SP24-201ENST00000516478 95 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 RNU6-1098P-201ENST00000516772 96 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC022616.8-201ENST00000533569 253 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC027288.2-201ENST00000553028 243 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC090517.1-201ENST00000569307 266 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AL133255.1-201ENST00000606374 441 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 SNORD14A-201ENST00000606526 91 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC103810.6-201ENST00000606708 136 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 MIR1244-1-201ENST00000612829 85 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 AC126177.8-201ENST00000618339 1015 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 CTSLP2-204ENST00000629029 392 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 MIR1244-3-201ENST00000635744 85 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 MIR1244-2-201ENST00000636449 85 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 MIR1244-4-202ENST00000636813 85 ntBASIC1.97□□□□□ -2.09
NKX3-1Q99801 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
NKX3-1Q99801 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.97□□□□□ -2.09
NKX3-1Q99801 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
NKX3-1Q99801 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.97□□□□□ -2.09
NKX3-1Q99801 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.96□□□□□ -2.1
NKX3-1Q99801 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
NKX3-1Q99801 RNA5SP289-201ENST00000362332 137 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RNU6-222P-201ENST00000362438 107 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 Y_RNA.106-201ENST00000363189 100 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RPS26P42-201ENST00000413485 326 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 MRPS18CP6-201ENST00000423587 223 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 IFNA11P-201ENST00000446352 526 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 MTCO3P8-201ENST00000453691 755 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 MIR2053-201ENST00000459295 91 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RN7SL429P-201ENST00000479090 223 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RN7SL489P-201ENST00000486185 223 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RN7SL327P-201ENST00000488659 223 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RPL17P19-201ENST00000489069 552 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 ATP5EP1-201ENST00000510257 156 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 AC093303.1-201ENST00000514549 295 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RNU6-58P-201ENST00000517143 103 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 AC034114.1-201ENST00000520293 285 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 AC091544.4-201ENST00000555268 342 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 AC104581.2-201ENST00000572227 430 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 SNORD53-201ENST00000579969 78 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.96□□□□□ -2.1
NKX3-1Q99801 RMST_6.1-201ENST00000611980 203 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 RN7SL853P-201ENST00000617250 223 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 U4atac.1-201ENST00000618345 95 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 ZNF204P-201ENST00000416749 2397 ntBASIC1.96□□□□□ -2.1
NKX3-1Q99801 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
NKX3-1Q99801 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
NKX3-1Q99801 SNORD115-32-201ENST00000364079 82 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 RNY3P11-201ENST00000364153 102 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 Y_RNA.315-201ENST00000365117 102 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 Y_RNA.394-201ENST00000383942 103 ntBASIC1.95□□□□□ -2.1
NKX3-1Q99801 MIR559-201ENST00000385188 96 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms