Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 SNORA36A-201ENST00000384221 132 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 RNU2-21P-201ENST00000410368 188 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 MTCO3P1-205ENST00000422088 832 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 AL008629.1-201ENST00000438615 184 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 MEMO1P3-201ENST00000459811 302 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 MIR548H1-201ENST00000408610 102 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 AC069271.1-201ENST00000445577 156 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 RNU6-759P-201ENST00000516740 103 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 RMST_4.1-201ENST00000616886 107 ntBASIC-1.48□□□□□ -2.65
VPS13AQ96RL7 RNU6-251P-201ENST00000363235 104 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AL162725.1-201ENST00000435405 301 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC105081.1-201ENST00000617727 106 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC068205.3-201ENST00000636385 468 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AL034345.1-201ENST00000407768 123 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 RNA5SP261-201ENST00000410536 106 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 LARP7P4-201ENST00000481075 878 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC093809.1-201ENST00000509155 340 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 MIR4300-201ENST00000581016 96 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC010615.3-201ENST00000597319 394 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 AC024581.2-201ENST00000619986 252 ntBASIC-1.49□□□□□ -2.65
VPS13AQ96RL7 RNU6-228P-201ENST00000362700 106 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 AC244250.2-201ENST00000418731 148 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 RNU6-947P-201ENST00000516264 106 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 snoU83B.1-201ENST00000517136 88 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 MTCO1P19-201ENST00000443487 500 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 XACT-201ENST00000468762 497 ntTSL 5 BASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 AC097462.1-201ENST00000514125 324 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 AC027338.1-201ENST00000514840 825 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 AL391840.1-201ENST00000571144 367 ntBASIC-1.5□□□□□ -2.65
VPS13AQ96RL7 RNU6-432P-201ENST00000384196 109 ntBASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 RNU6-922P-201ENST00000516753 99 ntBASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 MIR382-201ENST00000637119 76 ntBASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 PRRC2CP1-201ENST00000404428 159 ntBASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 TRAV32-201ENST00000553993 340 ntBASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 RNU6-1127P-201ENST00000384580 107 ntBASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-1.51□□□□□ -2.65
VPS13AQ96RL7 Y_RNA.234-201ENST00000364409 97 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 Y_RNA.330-201ENST00000365230 109 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AL031779.1-201ENST00000415663 330 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AC124293.1-201ENST00000530034 493 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AL139286.2-201ENST00000606838 396 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 TMSB4XP8-201ENST00000402089 135 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AC109329.1-201ENST00000518744 317 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 AC100767.1-201ENST00000528178 123 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 MIR3179-1-201ENST00000578940 84 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 MIR3179-2-201ENST00000579107 84 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 MIR3179-3-201ENST00000579566 84 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 MIR3179-4-201ENST00000617599 84 ntBASIC-1.52□□□□□ -2.65
VPS13AQ96RL7 MIR520G-201ENST00000385064 90 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 MIR520H-201ENST00000385126 88 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 RNU6-1029P-201ENST00000384109 107 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 MIR8485-201ENST00000401372 91 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 AL603865.2-201ENST00000401679 213 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 MRPS17P3-201ENST00000465453 385 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 MTND4P33-201ENST00000556706 766 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 AC006380.1-201ENST00000603598 186 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 AC092104.1-201ENST00000497346 1441 ntBASIC-1.53□□□□□ -2.65
VPS13AQ96RL7 Y_RNA.99-201ENST00000363138 105 ntBASIC-1.53□□□□□ -2.66
VPS13AQ96RL7 RNU6-611P-201ENST00000384276 104 ntBASIC-1.53□□□□□ -2.66
VPS13AQ96RL7 MIR487A-201ENST00000385009 80 ntBASIC-1.53□□□□□ -2.66
VPS13AQ96RL7 AC024082.2-201ENST00000434771 238 ntBASIC-1.53□□□□□ -2.66
VPS13AQ96RL7 FABP5P14-201ENST00000437273 393 ntBASIC-1.53□□□□□ -2.66
VPS13AQ96RL7 MIR655-201ENST00000362159 97 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 RNU6-502P-201ENST00000362419 108 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 RNU6-23P-201ENST00000363283 107 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 SNORD64-201ENST00000386683 67 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.692-201ENST00000516627 105 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 AP003072.5-201ENST00000623872 773 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 U6.99-201ENST00000637524 83 ntBASIC-1.54□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.1-201ENST00000352915 104 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 MTCYBP43-201ENST00000513621 740 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 SCARNA11.2-201ENST00000517183 154 ntBASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC-1.55□□□□□ -2.66
VPS13AQ96RL7 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.55□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms