Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC123900.1-201ENST00000420390 96 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 AL357552.1-201ENST00000445254 415 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RNU6-498P-201ENST00000459468 107 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RPS29P26-201ENST00000477483 171 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RNU6-991P-201ENST00000516168 107 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RNU2-27P-201ENST00000516185 142 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RNU2-31P-201ENST00000516954 155 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RNU2-12P-201ENST00000517216 168 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 NDUFA5P6-201ENST00000542110 379 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 PRELID2P1-201ENST00000552837 301 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 AC135776.4-201ENST00000624300 1904 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 SNORA38-201ENST00000363946 132 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 RNU6-454P-201ENST00000364292 107 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 RNA5SP509-201ENST00000364577 119 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.307-201ENST00000365022 117 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 RNU6-514P-201ENST00000384208 107 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.476-201ENST00000384347 108 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.562-201ENST00000384695 113 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AL139095.1-201ENST00000404326 391 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 RPL39P40-201ENST00000445481 146 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AL357134.1-201ENST00000445848 426 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 RNU6-221P-201ENST00000459541 99 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 SERF1AP1-201ENST00000514575 187 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AC026333.2-201ENST00000542164 106 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 MIR4700-201ENST00000578311 74 ntBASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CLRN3Q8NCR9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 SNORA25.1-201ENST00000362326 128 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.16-201ENST00000362421 102 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNU6-1266P-201ENST00000362794 105 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.383-201ENST00000383855 97 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.478-201ENST00000384358 107 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNA5SP424-201ENST00000390988 115 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNU6-1199P-201ENST00000411249 104 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNA5SP492-201ENST00000411330 114 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 AC008134.1-201ENST00000420943 193 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 AC024067.1-201ENST00000426199 223 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RPS29P33-201ENST00000456717 146 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNU7-26P-201ENST00000458980 63 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNU1-143P-201ENST00000516296 146 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RPPH1-2P-201ENST00000516688 293 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 SNORA70.19-201ENST00000516717 90 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 MIR4277-201ENST00000578298 84 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 AC025754.2-201ENST00000606491 432 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 U1.23-201ENST00000610293 146 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RNU1-68P-201ENST00000615382 146 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 U1.39-201ENST00000621562 146 ntBASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CLRN3Q8NCR9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.136-201ENST00000363444 102 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.243-201ENST00000364481 109 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.352-201ENST00000365439 102 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.447-201ENST00000384184 113 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 RNU6-57P-201ENST00000411348 103 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 RPL19P1-201ENST00000411635 428 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 UQCRHP3-201ENST00000451503 251 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 PRELID3BP1-201ENST00000457142 540 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 SNORA4.4-201ENST00000515921 135 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 RNA5SP217-201ENST00000515959 91 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 RNA5SP76-201ENST00000516277 87 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 AC012433.1-201ENST00000588916 398 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 MIR6868-201ENST00000611215 58 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 MIR6733-201ENST00000635723 61 ntBASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CLRN3Q8NCR9 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.99-201ENST00000363138 105 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 RNU6-324P-201ENST00000363957 106 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 RNU6-418P-201ENST00000384035 107 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 RNU6-1248P-201ENST00000391096 64 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 U3.40-201ENST00000408706 208 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 RPL32P35-201ENST00000415214 394 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 EDDM3CP-201ENST00000415977 425 ntBASIC2.79□□□□□ -1.96
CLRN3Q8NCR9 AC245102.2-201ENST00000448956 180 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 173.3 ms