Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORA59B-202ENST00000578183 701 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MIR4753-201ENST00000585119 83 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AL078603.1-201ENST00000603824 313 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AL645939.4-201ENST00000604495 135 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AC104458.1-201ENST00000608243 463 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AC103705.1-201ENST00000619013 241 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MIR8063-201ENST00000621930 81 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AL359697.1-201ENST00000624879 587 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AC068205.3-201ENST00000636385 468 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 RNU6-42P-201ENST00000384165 107 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 RNA5SP494-201ENST00000410653 129 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 AC079140.3-201ENST00000511111 550 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 RNU6-1041P-201ENST00000516254 102 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 AC006362.1-201ENST00000567392 174 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 SNORA4-201ENST00000584302 138 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 AC064836.2-201ENST00000609491 462 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 AC005562.2-201ENST00000618264 111 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 AC139792.3-201ENST00000623525 224 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 AC090582.1-201ENST00000636321 199 ntBASIC1.59□□□□□ -2.15
HDDC3Q8N4P3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
HDDC3Q8N4P3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
HDDC3Q8N4P3 ZNF209P-201ENST00000593450 2304 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.77-201ENST00000362962 107 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1019P-201ENST00000364424 107 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.359-201ENST00000365498 102 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 MIR517C-201ENST00000385103 95 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.582-201ENST00000391023 95 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 RPS20P15-201ENST00000412792 311 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AC099677.2-201ENST00000436385 175 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AC010486.3-201ENST00000511602 785 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 SNORA19.2-201ENST00000516013 114 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 RNA5SP481-201ENST00000516814 122 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AP003034.1-201ENST00000534621 422 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AL161670.1-201ENST00000554348 137 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AC026470.2-201ENST00000561492 181 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 FER-210ENST00000628534 558 ntTSL 5 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 AC100821.1-201ENST00000523153 2479 ntBASIC1.58□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1317P-201ENST00000364582 104 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 RNU6-418P-201ENST00000384035 107 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 SNORA29-201ENST00000384183 140 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 RNU6-360P-201ENST00000390944 104 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 MIR1283-1-201ENST00000408494 87 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 JTBP1-201ENST00000441314 247 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1069P-201ENST00000516612 133 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 RNU6-856P-201ENST00000516959 98 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 AC015720.1-201ENST00000565251 277 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 MIR5006-201ENST00000583027 110 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 AC010928.2-201ENST00000588017 287 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 MIR6734-201ENST00000621166 68 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 ICE2P2-201ENST00000483823 2787 ntBASIC1.57□□□□□ -2.16
HDDC3Q8N4P3 Y_RNA.123-201ENST00000363338 102 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1329P-201ENST00000365664 107 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU6-968P-201ENST00000384076 107 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU6-1042P-201ENST00000384204 107 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNY1P14-201ENST00000384426 108 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU1-78P-201ENST00000391248 165 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU6-174P-201ENST00000410406 106 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 CDK8P2-201ENST00000415020 547 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 MTCO3P29-201ENST00000432119 779 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 AC245047.4-201ENST00000433189 144 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 MTND1P26-201ENST00000440488 538 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 AC069257.2-201ENST00000441819 155 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU6-261P-201ENST00000459506 102 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RPS29P27-201ENST00000463711 170 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 AC114982.1-201ENST00000469402 321 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RPL26P26-201ENST00000480251 434 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 HMGN1P7-201ENST00000491722 313 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNA5SP220-201ENST00000516298 104 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNU2-34P-201ENST00000516534 121 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 SNORA31.24-201ENST00000517232 57 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 RNA5SP437-201ENST00000517249 129 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 DEFB131C-201ENST00000528817 165 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 MIR4421-201ENST00000578133 69 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 MIR4452-201ENST00000583004 71 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 MIR3976-201ENST00000606807 139 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 AL121757.2-201ENST00000611223 313 ntBASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HDDC3Q8N4P3 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
HDDC3Q8N4P3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms