Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 Y_RNA.51-201ENST00000362725 102 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 RNU6-438P-201ENST00000365561 103 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 RNU6-259P-201ENST00000383999 107 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 NCOR1P3-201ENST00000420479 303 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 TIMM9P3-201ENST00000428659 274 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 MTND3P9-201ENST00000429526 346 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 AC009474.2-201ENST00000451383 136 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 RNU7-95P-201ENST00000459222 64 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 RPL9P9-202ENST00000466501 579 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 MRPS36P4-201ENST00000534436 298 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 AC068338.1-201ENST00000565567 176 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 SNORA59B-202ENST00000578183 701 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 CPDP1-201ENST00000579660 283 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 RPL17P51-201ENST00000605218 238 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 AC124864.2-201ENST00000624736 186 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 MIR6863-201ENST00000636112 90 ntBASIC1.43□□□□□ -2.18
CCDC65Q8IXS2 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 MIR26B-201ENST00000362251 77 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 RNU6-545P-201ENST00000362681 104 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 SNORA18.2-201ENST00000383865 132 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 RNU6-482P-201ENST00000391068 107 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 RNU6-1093P-201ENST00000391194 107 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AL117342.1-201ENST00000404861 406 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 MTCO1P20-201ENST00000425366 358 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 C8orf59P1-201ENST00000429930 303 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AC245047.4-201ENST00000433189 144 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 MTND1P29-201ENST00000448112 647 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AC112492.4-201ENST00000456549 352 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 SRRM1P2-201ENST00000464531 1192 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AC087477.1-201ENST00000465747 340 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 RPL31P58-201ENST00000469001 379 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AC004223.1-201ENST00000479840 271 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 RPS23P5-201ENST00000495419 428 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AC091885.1-201ENST00000506658 268 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 SNORA77B-201ENST00000578179 125 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 MIR4422-201ENST00000581938 83 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 AL357078.3-201ENST00000607528 618 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.42□□□□□ -2.18
CCDC65Q8IXS2 RNU6-562P-201ENST00000362731 107 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 SNORA7.1-201ENST00000363750 139 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 SNORA40.6-201ENST00000391153 128 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 MTCO3P40-201ENST00000392516 676 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC004866.1-201ENST00000411748 78 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AL359672.1-201ENST00000442302 409 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC007395.1-201ENST00000451333 677 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 MIR3660-201ENST00000584845 100 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC016727.2-201ENST00000603988 621 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AP001485.1-201ENST00000604799 199 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AL158209.2-201ENST00000619266 216 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AL359880.1-201ENST00000621879 266 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 AC121333.1-201ENST00000567488 2709 ntBASIC1.41□□□□□ -2.18
CCDC65Q8IXS2 Y_RNA.67-201ENST00000362870 100 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 SNORD37.1-201ENST00000390968 65 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 RPS26P42-201ENST00000413485 326 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AC060773.1-201ENST00000421698 310 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 USP9YP28-201ENST00000435142 589 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 HMGN2P9-201ENST00000476875 229 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AC019235.1-201ENST00000503847 207 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AC091435.1-201ENST00000505442 584 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 SNORA19.2-201ENST00000516013 114 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 Y_RNA.693-201ENST00000516641 110 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AC100830.2-201ENST00000581636 240 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 RNU6-89P-201ENST00000606519 100 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 RMST_3.1-201ENST00000611651 109 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 FER-210ENST00000628534 558 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.4□□□□□ -2.19
CCDC65Q8IXS2 AL159152.1-201ENST00000635019 2587 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms