Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC079140.2-201ENST00000506193 142 ntBASIC1.12□□□□□ -2.23
USF1P22415 AC108078.1-201ENST00000508073 725 ntBASIC1.12□□□□□ -2.23
USF1P22415 RNU6-1041P-201ENST00000516254 102 ntBASIC1.12□□□□□ -2.23
USF1P22415 RNA5SP61-201ENST00000516453 100 ntBASIC1.12□□□□□ -2.23
USF1P22415 MTND4P7-201ENST00000523876 130 ntBASIC1.12□□□□□ -2.23
USF1P22415 CTHRC1P1-201ENST00000605383 469 ntBASIC1.12□□□□□ -2.23
USF1P22415 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.12□□□□□ -2.23
USF1P22415 RNU6-545P-201ENST00000362681 104 ntBASIC1.11□□□□□ -2.23
USF1P22415 SNORA18.2-201ENST00000383865 132 ntBASIC1.11□□□□□ -2.23
USF1P22415 RNU5A-6P-201ENST00000384136 116 ntBASIC1.11□□□□□ -2.23
USF1P22415 MIR548B-201ENST00000385247 97 ntBASIC1.11□□□□□ -2.23
USF1P22415 MIR758-201ENST00000390227 88 ntBASIC1.11□□□□□ -2.23
USF1P22415 AL117342.1-201ENST00000404861 406 ntBASIC1.11□□□□□ -2.23
USF1P22415 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.11□□□□□ -2.23
USF1P22415 AC010486.2-201ENST00000505572 483 ntBASIC1.11□□□□□ -2.23
USF1P22415 AC010493.1-201ENST00000513479 292 ntBASIC1.11□□□□□ -2.23
USF1P22415 RNU2-34P-201ENST00000516534 121 ntBASIC1.11□□□□□ -2.23
USF1P22415 RNU6-612P-201ENST00000516909 102 ntBASIC1.11□□□□□ -2.23
USF1P22415 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.11□□□□□ -2.23
USF1P22415 LRRC34P1-201ENST00000542742 915 ntBASIC1.11□□□□□ -2.23
USF1P22415 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.11□□□□□ -2.23
USF1P22415 AC005668.1-201ENST00000571142 476 ntBASIC1.11□□□□□ -2.23
USF1P22415 AL078603.1-201ENST00000603824 313 ntBASIC1.11□□□□□ -2.23
USF1P22415 MIR3976-201ENST00000606807 139 ntBASIC1.11□□□□□ -2.23
USF1P22415 AL353149.1-201ENST00000610667 244 ntBASIC1.11□□□□□ -2.23
USF1P22415 uc_338.34-201ENST00000617467 174 ntBASIC1.11□□□□□ -2.23
USF1P22415 AL359697.1-201ENST00000624879 587 ntBASIC1.11□□□□□ -2.23
USF1P22415 AC095038.3-201ENST00000634439 195 ntBASIC1.11□□□□□ -2.23
USF1P22415 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.1□□□□□ -2.23
USF1P22415 RNU6-227P-201ENST00000362865 103 ntBASIC1.1□□□□□ -2.23
USF1P22415 RNU6-53P-201ENST00000365367 106 ntBASIC1.1□□□□□ -2.23
USF1P22415 RNU6-418P-201ENST00000384035 107 ntBASIC1.1□□□□□ -2.23
USF1P22415 SNORD73A-201ENST00000386062 65 ntBASIC1.1□□□□□ -2.23
USF1P22415 MIR1283-1-201ENST00000408494 87 ntBASIC1.1□□□□□ -2.23
USF1P22415 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.1□□□□□ -2.23
USF1P22415 RPS27P16-201ENST00000425758 201 ntBASIC1.1□□□□□ -2.23
USF1P22415 CST2P1-201ENST00000425770 87 ntBASIC1.1□□□□□ -2.23
USF1P22415 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.1□□□□□ -2.23
USF1P22415 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.1□□□□□ -2.23
USF1P22415 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.1□□□□□ -2.23
USF1P22415 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.1□□□□□ -2.23
USF1P22415 AC073415.1-201ENST00000449240 153 ntBASIC1.1□□□□□ -2.23
USF1P22415 OR2AQ1P-201ENST00000451972 200 ntBASIC1.1□□□□□ -2.23
USF1P22415 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.1□□□□□ -2.23
USF1P22415 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.1□□□□□ -2.23
USF1P22415 SNORA59B-202ENST00000578183 701 ntBASIC1.1□□□□□ -2.23
USF1P22415 AC004223.2-201ENST00000590309 544 ntBASIC1.1□□□□□ -2.23
USF1P22415 HULC.1-201ENST00000612720 240 ntBASIC1.1□□□□□ -2.23
USF1P22415 AC008147.4-201ENST00000617570 1204 ntBASIC1.1□□□□□ -2.23
USF1P22415 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.1□□□□□ -2.23
USF1P22415 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.1□□□□□ -2.23
USF1P22415 RNU6-42P-201ENST00000384165 107 ntBASIC1.09□□□□□ -2.23
USF1P22415 RNA5SP219-201ENST00000390940 113 ntBASIC1.09□□□□□ -2.23
USF1P22415 SNORA40.6-201ENST00000391153 128 ntBASIC1.09□□□□□ -2.23
USF1P22415 RPL21P1-201ENST00000399532 476 ntBASIC1.09□□□□□ -2.23
USF1P22415 RN7SKP142-201ENST00000411236 328 ntBASIC1.09□□□□□ -2.23
USF1P22415 AL161935.2-201ENST00000414627 60 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC060773.1-201ENST00000421698 310 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.09□□□□□ -2.23
USF1P22415 AL135790.2-201ENST00000437701 267 ntBASIC1.09□□□□□ -2.23
USF1P22415 MTCYBP18-201ENST00000501056 747 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC091435.1-201ENST00000505442 584 ntBASIC1.09□□□□□ -2.23
USF1P22415 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC011406.1-201ENST00000512440 370 ntBASIC1.09□□□□□ -2.23
USF1P22415 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
USF1P22415 SNORA14.1-201ENST00000516113 141 ntBASIC1.09□□□□□ -2.23
USF1P22415 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.09□□□□□ -2.23
USF1P22415 RNA5SP384-201ENST00000516615 116 ntBASIC1.09□□□□□ -2.23
USF1P22415 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.09□□□□□ -2.23
USF1P22415 RRN3P3-201ENST00000549207 578 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC026470.2-201ENST00000561492 181 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC145350.1-201ENST00000567426 208 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC015688.6-201ENST00000577737 104 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.09□□□□□ -2.23
USF1P22415 SNORA4-201ENST00000584302 138 ntBASIC1.09□□□□□ -2.23
USF1P22415 MIR4753-201ENST00000585119 83 ntBASIC1.09□□□□□ -2.23
USF1P22415 NIFKP6-201ENST00000598115 845 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC136443.5-201ENST00000603741 370 ntBASIC1.09□□□□□ -2.23
USF1P22415 AC005562.2-201ENST00000618264 111 ntBASIC1.09□□□□□ -2.23
USF1P22415 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.09□□□□□ -2.24
USF1P22415 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.08□□□□□ -2.24
USF1P22415 BX322639.1-202ENST00000423987 2213 ntBASIC1.08□□□□□ -2.24
USF1P22415 AL049545.1-201ENST00000401856 572 ntBASIC1.08□□□□□ -2.24
USF1P22415 AL606923.1-201ENST00000406616 190 ntBASIC1.08□□□□□ -2.24
USF1P22415 snoU13.6-201ENST00000458785 104 ntBASIC1.08□□□□□ -2.24
USF1P22415 snoU13.27-201ENST00000459278 104 ntBASIC1.08□□□□□ -2.24
USF1P22415 RPS29P27-201ENST00000463711 170 ntBASIC1.08□□□□□ -2.24
USF1P22415 RPL30P7-201ENST00000479312 323 ntBASIC1.08□□□□□ -2.24
USF1P22415 ARL2BPP4-201ENST00000506854 471 ntBASIC1.08□□□□□ -2.24
USF1P22415 CCDC34P1-201ENST00000507441 517 ntBASIC1.08□□□□□ -2.24
USF1P22415 RPL39P5-202ENST00000512505 151 ntBASIC1.08□□□□□ -2.24
USF1P22415 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.08□□□□□ -2.24
USF1P22415 RNA5SP220-201ENST00000516298 104 ntBASIC1.08□□□□□ -2.24
USF1P22415 RNU6-323P-201ENST00000521915 107 ntBASIC1.08□□□□□ -2.24
USF1P22415 DEFB131C-201ENST00000528817 165 ntBASIC1.08□□□□□ -2.24
USF1P22415 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.08□□□□□ -2.24
USF1P22415 MIR4528-201ENST00000577763 90 ntBASIC1.08□□□□□ -2.24
USF1P22415 MIR3937-201ENST00000580135 106 ntBASIC1.08□□□□□ -2.24
USF1P22415 MIR3660-201ENST00000584845 100 ntBASIC1.08□□□□□ -2.24
USF1P22415 AC087683.1-201ENST00000591187 441 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms