Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.128-201ENST00000363391 112 ntBASIC2.22□□□□□ -2.05
MSH3P20585 SNORD115-32-201ENST00000364079 82 ntBASIC2.22□□□□□ -2.05
MSH3P20585 Y_RNA.252-201ENST00000364556 101 ntBASIC2.22□□□□□ -2.05
MSH3P20585 RNA5SP125-201ENST00000364843 120 ntBASIC2.22□□□□□ -2.05
MSH3P20585 SNORA6-201ENST00000384033 151 ntBASIC2.22□□□□□ -2.05
MSH3P20585 MIR221-201ENST00000385135 110 ntBASIC2.22□□□□□ -2.05
MSH3P20585 SNORA12.2-201ENST00000391040 156 ntBASIC2.22□□□□□ -2.05
MSH3P20585 MTCYBP2-201ENST00000407745 171 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AC018865.2-201ENST00000423631 129 ntBASIC2.22□□□□□ -2.05
MSH3P20585 MTCO3P29-201ENST00000432119 779 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AC018634.1-201ENST00000437554 401 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.22□□□□□ -2.05
MSH3P20585 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH3P20585 AL139109.1-201ENST00000455491 297 ntBASIC2.22□□□□□ -2.05
MSH3P20585 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.22□□□□□ -2.05
MSH3P20585 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH3P20585 RPL23AP94-201ENST00000512518 302 ntBASIC2.22□□□□□ -2.05
MSH3P20585 RNU7-175P-201ENST00000515915 61 ntBASIC2.22□□□□□ -2.05
MSH3P20585 CYP4A27P-201ENST00000567218 190 ntBASIC2.22□□□□□ -2.05
MSH3P20585 7SK.7-201ENST00000603504 247 ntBASIC2.22□□□□□ -2.05
MSH3P20585 RMST_6.1-201ENST00000611980 203 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AL590808.1-201ENST00000618696 141 ntBASIC2.22□□□□□ -2.05
MSH3P20585 MIR6873-201ENST00000622788 63 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AC091925.1-201ENST00000623204 462 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AC134503.1-201ENST00000633048 54 ntBASIC2.22□□□□□ -2.05
MSH3P20585 AC131280.1-202ENST00000624067 4211 ntBASIC2.22□□□□□ -2.05
MSH3P20585 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
MSH3P20585 snoU2_19.1-201ENST00000362361 80 ntBASIC2.21□□□□□ -2.06
MSH3P20585 RNU4-56P-201ENST00000364700 142 ntBASIC2.21□□□□□ -2.06
MSH3P20585 U8.10-201ENST00000384260 133 ntBASIC2.21□□□□□ -2.06
MSH3P20585 RNU6-1011P-201ENST00000384668 107 ntBASIC2.21□□□□□ -2.06
MSH3P20585 RNU6-1156P-201ENST00000410365 100 ntBASIC2.21□□□□□ -2.06
MSH3P20585 RPS26P42-201ENST00000413485 326 ntBASIC2.21□□□□□ -2.06
MSH3P20585 AL135786.1-201ENST00000415892 214 ntBASIC2.21□□□□□ -2.06
MSH3P20585 MTCYBP10-201ENST00000424905 650 ntBASIC2.21□□□□□ -2.06
MSH3P20585 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
MSH3P20585 AC005534.2-201ENST00000431047 433 ntBASIC2.21□□□□□ -2.06
MSH3P20585 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH3P20585 snoU13.6-201ENST00000458785 104 ntBASIC2.21□□□□□ -2.06
MSH3P20585 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH3P20585 SNRPGP18-201ENST00000553000 214 ntBASIC2.21□□□□□ -2.06
MSH3P20585 AL713866.2-201ENST00000603579 219 ntBASIC2.21□□□□□ -2.06
MSH3P20585 SNRPGP17-201ENST00000603780 214 ntBASIC2.21□□□□□ -2.06
MSH3P20585 MIR6840-201ENST00000611937 71 ntBASIC2.21□□□□□ -2.06
MSH3P20585 AC005520.5-201ENST00000613926 164 ntBASIC2.21□□□□□ -2.06
MSH3P20585 AC245884.12-201ENST00000615364 59 ntBASIC2.21□□□□□ -2.06
MSH3P20585 MIR6132-201ENST00000622083 109 ntBASIC2.21□□□□□ -2.06
MSH3P20585 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
MSH3P20585 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
MSH3P20585 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
MSH3P20585 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
MSH3P20585 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH3P20585 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
MSH3P20585 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.2□□□□□ -2.06
MSH3P20585 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
MSH3P20585 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.2□□□□□ -2.06
MSH3P20585 RNU6-874P-201ENST00000362390 105 ntBASIC2.2□□□□□ -2.06
MSH3P20585 Y_RNA.31-201ENST00000362574 102 ntBASIC2.2□□□□□ -2.06
MSH3P20585 SNORA38-201ENST00000363946 132 ntBASIC2.2□□□□□ -2.06
MSH3P20585 RNU6-17P-201ENST00000384245 107 ntBASIC2.2□□□□□ -2.06
MSH3P20585 Y_RNA.496-201ENST00000384444 101 ntBASIC2.2□□□□□ -2.06
MSH3P20585 RNU6-18P-201ENST00000384527 107 ntBASIC2.2□□□□□ -2.06
MSH3P20585 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
MSH3P20585 RNU6-700P-201ENST00000391043 107 ntBASIC2.2□□□□□ -2.06
MSH3P20585 MIR1302-11-201ENST00000408051 138 ntBASIC2.2□□□□□ -2.06
MSH3P20585 MIR1302-9-201ENST00000408365 138 ntBASIC2.2□□□□□ -2.06
MSH3P20585 MIR1302-10-201ENST00000408734 138 ntBASIC2.2□□□□□ -2.06
MSH3P20585 RNA5SP201-201ENST00000410316 124 ntBASIC2.2□□□□□ -2.06
MSH3P20585 MRPS18CP6-201ENST00000423587 223 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AL356320.1-201ENST00000429616 163 ntBASIC2.2□□□□□ -2.06
MSH3P20585 OR2AQ1P-201ENST00000451972 200 ntBASIC2.2□□□□□ -2.06
MSH3P20585 Y_RNA.631-201ENST00000459607 101 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AC090515.1-201ENST00000465295 476 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AC104435.1-201ENST00000483483 166 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.2□□□□□ -2.06
MSH3P20585 AC020661.2-201ENST00000560114 134 ntBASIC2.2□□□□□ -2.06
MSH3P20585 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH3P20585 AC004584.2-201ENST00000570407 410 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AC009127.3-201ENST00000570531 403 ntBASIC2.2□□□□□ -2.06
MSH3P20585 MIR1302-2-201ENST00000607096 138 ntBASIC2.2□□□□□ -2.06
MSH3P20585 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AC137590.2-201ENST00000619709 240 ntBASIC2.2□□□□□ -2.06
MSH3P20585 AC064859.1-201ENST00000624741 174 ntBASIC2.2□□□□□ -2.06
MSH3P20585 ZNF720P1-201ENST00000562403 1939 ntBASIC2.2□□□□□ -2.06
MSH3P20585 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
MSH3P20585 RNU6-1159P-201ENST00000362933 107 ntBASIC2.19□□□□□ -2.06
MSH3P20585 Y_RNA.428-201ENST00000384078 102 ntBASIC2.19□□□□□ -2.06
MSH3P20585 MIR32-201ENST00000384965 70 ntBASIC2.19□□□□□ -2.06
MSH3P20585 MIR190B-201ENST00000401119 79 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AC003685.2-201ENST00000422795 395 ntBASIC2.19□□□□□ -2.06
MSH3P20585 PMCHL1-202ENST00000423102 261 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH3P20585 WARS2P1-201ENST00000429678 537 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AC099799.1-201ENST00000439809 192 ntBASIC2.19□□□□□ -2.06
MSH3P20585 IPO7P1-201ENST00000442031 636 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AL035666.1-201ENST00000446195 348 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.19□□□□□ -2.06
MSH3P20585 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.19□□□□□ -2.06
MSH3P20585 AC145146.1-201ENST00000496370 254 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AC105758.1-201ENST00000506038 399 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms