Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC018630.2-201ENST00000534866 2403 ntBASIC0.65□□□□□ -2.31
TPM1P09493 RNU6-110P-201ENST00000384508 104 ntBASIC0.64□□□□□ -2.31
TPM1P09493 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
TPM1P09493 MIR1253-201ENST00000408273 105 ntBASIC0.64□□□□□ -2.31
TPM1P09493 USP9YP12-201ENST00000450481 570 ntBASIC0.64□□□□□ -2.31
TPM1P09493 AL162395.1-201ENST00000457882 422 ntBASIC0.64□□□□□ -2.31
TPM1P09493 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
TPM1P09493 RNA5SP458-201ENST00000516188 119 ntBASIC0.64□□□□□ -2.31
TPM1P09493 RNU6-1069P-201ENST00000516612 133 ntBASIC0.64□□□□□ -2.31
TPM1P09493 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.64□□□□□ -2.31
TPM1P09493 AC026470.2-201ENST00000561492 181 ntBASIC0.64□□□□□ -2.31
TPM1P09493 MIR8054-201ENST00000620877 86 ntBASIC0.64□□□□□ -2.31
TPM1P09493 AC106754.2-201ENST00000623006 233 ntBASIC0.64□□□□□ -2.31
TPM1P09493 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
TPM1P09493 MIR373-201ENST00000362273 69 ntBASIC0.63□□□□□ -2.31
TPM1P09493 RNU6-393P-201ENST00000384475 107 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AL355143.1-201ENST00000407101 841 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.63□□□□□ -2.31
TPM1P09493 AL596276.1-201ENST00000434465 418 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AC104850.1-201ENST00000435940 476 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC0.63□□□□□ -2.31
TPM1P09493 NFU1P2-201ENST00000448700 469 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.63□□□□□ -2.31
TPM1P09493 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.63□□□□□ -2.31
TPM1P09493 RNU6-410P-201ENST00000517006 107 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.63□□□□□ -2.31
TPM1P09493 APOOP3-201ENST00000536787 586 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.63□□□□□ -2.31
TPM1P09493 MIR5006-201ENST00000583027 110 ntBASIC0.63□□□□□ -2.31
TPM1P09493 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.63□□□□□ -2.31
TPM1P09493 AC146944.4-201ENST00000602697 718 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AC022217.4-201ENST00000604389 163 ntBASIC0.63□□□□□ -2.31
TPM1P09493 TCL6_2.1-201ENST00000615162 119 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AL603839.4-201ENST00000624658 1005 ntBASIC0.63□□□□□ -2.31
TPM1P09493 AC068700.1-201ENST00000565862 3754 ntBASIC0.63□□□□□ -2.31
TPM1P09493 RNU4-76P-201ENST00000364509 141 ntBASIC0.62□□□□□ -2.31
TPM1P09493 RNU5E-5P-201ENST00000365379 116 ntBASIC0.62□□□□□ -2.31
TPM1P09493 RNU6-434P-201ENST00000384376 107 ntBASIC0.62□□□□□ -2.31
TPM1P09493 RNU4-46P-201ENST00000410818 138 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.62□□□□□ -2.31
TPM1P09493 AL356583.2-201ENST00000426536 280 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AC004386.2-201ENST00000441858 148 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.62□□□□□ -2.31
TPM1P09493 AC074290.1-201ENST00000448883 135 ntBASIC0.62□□□□□ -2.31
TPM1P09493 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.62□□□□□ -2.31
TPM1P09493 RPS26P48-201ENST00000491713 339 ntBASIC0.62□□□□□ -2.31
TPM1P09493 RNU1-142P-201ENST00000516682 145 ntBASIC0.62□□□□□ -2.31
TPM1P09493 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.62□□□□□ -2.31
TPM1P09493 AC016256.1-201ENST00000547971 354 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AC133485.1-201ENST00000567176 124 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AC138907.6-201ENST00000568401 126 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AL353765.1-201ENST00000605514 183 ntBASIC0.62□□□□□ -2.31
TPM1P09493 AL133173.2-201ENST00000614270 90 ntBASIC0.62□□□□□ -2.31
TPM1P09493 U6.108-201ENST00000637764 58 ntBASIC0.62□□□□□ -2.31
TPM1P09493 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
TPM1P09493 SNORD41-201ENST00000386967 70 ntBASIC0.61□□□□□ -2.31
TPM1P09493 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.61□□□□□ -2.31
TPM1P09493 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.61□□□□□ -2.31
TPM1P09493 EPS15P1-201ENST00000448836 336 ntBASIC0.61□□□□□ -2.31
TPM1P09493 RNU2-69P-201ENST00000516061 100 ntBASIC0.61□□□□□ -2.31
TPM1P09493 Vault.3-201ENST00000516676 95 ntBASIC0.61□□□□□ -2.31
TPM1P09493 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.61□□□□□ -2.31
TPM1P09493 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
TPM1P09493 AC004812.1-201ENST00000540773 146 ntBASIC0.61□□□□□ -2.31
TPM1P09493 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.61□□□□□ -2.31
TPM1P09493 MIR4775-201ENST00000581168 75 ntBASIC0.61□□□□□ -2.31
TPM1P09493 AC002044.1-201ENST00000606707 158 ntBASIC0.61□□□□□ -2.31
TPM1P09493 MIR653-201ENST00000385279 96 ntBASIC0.6□□□□□ -2.31
TPM1P09493 MIR454-201ENST00000390180 115 ntBASIC0.6□□□□□ -2.31
TPM1P09493 AC079781.2-201ENST00000446424 169 ntBASIC0.6□□□□□ -2.31
TPM1P09493 snoU13.6-201ENST00000458785 104 ntBASIC0.6□□□□□ -2.31
TPM1P09493 BET1P1-201ENST00000482276 359 ntBASIC0.6□□□□□ -2.31
TPM1P09493 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.6□□□□□ -2.31
TPM1P09493 HMGB1P29-201ENST00000505659 499 ntBASIC0.6□□□□□ -2.31
TPM1P09493 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.6□□□□□ -2.31
TPM1P09493 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.6□□□□□ -2.31
TPM1P09493 RSL24D1P11-201ENST00000591045 491 ntBASIC0.6□□□□□ -2.31
TPM1P09493 AC080078.2-201ENST00000603766 501 ntBASIC0.6□□□□□ -2.31
TPM1P09493 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.6□□□□□ -2.31
TPM1P09493 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.31
TPM1P09493 RNU4-12P-201ENST00000365233 139 ntBASIC0.59□□□□□ -2.31
TPM1P09493 MIR660-201ENST00000385235 97 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AL034345.1-201ENST00000407768 123 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.59□□□□□ -2.31
TPM1P09493 TAF9P1-201ENST00000445421 515 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AC009237.7-201ENST00000447357 229 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.59□□□□□ -2.31
TPM1P09493 TAF9P2-201ENST00000454958 515 ntBASIC0.59□□□□□ -2.31
TPM1P09493 RNU7-182P-201ENST00000459009 62 ntBASIC0.59□□□□□ -2.31
TPM1P09493 RPS27P22-201ENST00000478056 241 ntBASIC0.59□□□□□ -2.31
TPM1P09493 TRMT112P2-201ENST00000512910 132 ntBASIC0.59□□□□□ -2.31
TPM1P09493 RNU2-46P-201ENST00000517038 113 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AC007834.2-201ENST00000536310 343 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AC016727.1-205ENST00000605437 569 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AC097065.2-201ENST00000608159 533 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AL359075.3-201ENST00000613288 217 ntBASIC0.59□□□□□ -2.31
TPM1P09493 AC073349.3-201ENST00000617616 186 ntBASIC0.59□□□□□ -2.31
TPM1P09493 RNU6-500P-201ENST00000362349 107 ntBASIC0.58□□□□□ -2.32
TPM1P09493 RNU6-266P-201ENST00000364225 107 ntBASIC0.58□□□□□ -2.32
TPM1P09493 MIR586-201ENST00000385035 97 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms