Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.37□□□□□ -2.19
CLDN9O95484 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.36□□□□□ -2.19
CLDN9O95484 MTND5P10-201ENST00000603719 1809 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 AL391987.6-201ENST00000305671 199 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
CLDN9O95484 RNU6-545P-201ENST00000362681 104 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 RNU6-227P-201ENST00000362865 103 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 Y_RNA.327-201ENST00000365201 102 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 SNORD116-8-201ENST00000384365 95 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 RNU4-55P-201ENST00000410731 137 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.36□□□□□ -2.19
CLDN9O95484 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.36□□□□□ -2.19
CLDN9O95484 HSPE1P9-201ENST00000440046 311 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.36□□□□□ -2.19
CLDN9O95484 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.36□□□□□ -2.19
CLDN9O95484 MTCO3P38-201ENST00000468910 766 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.36□□□□□ -2.19
CLDN9O95484 AC114801.2-201ENST00000503825 781 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 RNU6-1041P-201ENST00000516254 102 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 DEFB131C-201ENST00000528817 165 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 AP003034.1-201ENST00000534621 422 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 AC119751.7-201ENST00000600494 245 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 AC064836.2-201ENST00000609491 462 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CLDN9O95484 ELL2P3-201ENST00000457883 1602 ntBASIC1.36□□□□□ -2.19
CLDN9O95484 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CLDN9O95484 AC010615.1-201ENST00000594254 1764 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 RNU1-96P-201ENST00000364163 162 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 RNU6-174P-201ENST00000410406 106 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 EBAG9P1-201ENST00000418955 543 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 AC245047.4-201ENST00000433189 144 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 AC108078.1-201ENST00000508073 725 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 AC025465.4-201ENST00000513422 638 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 SNORA40.12-201ENST00000516329 111 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 RNA5SP61-201ENST00000516453 100 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 RNA5SP437-201ENST00000517249 129 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.35□□□□□ -2.19
CLDN9O95484 CENPUP1-201ENST00000526649 1202 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.35□□□□□ -2.19
CLDN9O95484 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.35□□□□□ -2.19
CLDN9O95484 MIR4422-201ENST00000581938 83 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.35□□□□□ -2.19
CLDN9O95484 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 MIR8063-201ENST00000621930 81 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 AC121333.1-201ENST00000567488 2709 ntBASIC1.35□□□□□ -2.19
CLDN9O95484 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
CLDN9O95484 Y_RNA.36-201ENST00000362602 112 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 RNU6-392P-201ENST00000364926 101 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 Y_RNA.359-201ENST00000365498 102 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 RNU6-418P-201ENST00000384035 107 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 Y_RNA.553-201ENST00000384670 102 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 AL663109.1-201ENST00000411498 844 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 ARL5AP1-201ENST00000418991 388 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 MTND1P26-201ENST00000440488 538 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 MTCO1P19-201ENST00000443487 500 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 U8.21-201ENST00000459536 136 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 RPS29P27-201ENST00000463711 170 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 FO393415.2-201ENST00000480085 343 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 RPL26P26-201ENST00000480251 434 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 RNA5SP401-201ENST00000515920 127 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 AC087854.1-201ENST00000519706 414 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.34□□□□□ -2.19
CLDN9O95484 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.34□□□□□ -2.19
CLDN9O95484 AC016256.1-201ENST00000547971 354 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 SNORA77B-201ENST00000578179 125 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 AL360085.1-201ENST00000604713 532 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 CTHRC1P1-201ENST00000605383 469 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 MIR3976-201ENST00000606807 139 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 AL357078.3-201ENST00000607528 618 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 AC005562.2-201ENST00000618264 111 ntBASIC1.34□□□□□ -2.19
CLDN9O95484 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.34□□□□□ -2.19
CLDN9O95484 AC100821.1-201ENST00000523153 2479 ntBASIC1.34□□□□□ -2.2
CLDN9O95484 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
CLDN9O95484 RNU1-62P-201ENST00000362599 164 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 RNU6-271P-201ENST00000363858 105 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 RNU6-1317P-201ENST00000364582 104 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 RNU4-66P-201ENST00000365199 138 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 Y_RNA.374-201ENST00000365606 101 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 SNORA29-201ENST00000384183 140 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 MIR548B-201ENST00000385247 97 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 MIR1283-1-201ENST00000408494 87 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 AC004965.1-201ENST00000413033 213 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 MTCO1P21-201ENST00000416634 589 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.33□□□□□ -2.2
CLDN9O95484 JTBP1-201ENST00000441314 247 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 RNU7-95P-201ENST00000459222 64 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 AC010424.1-201ENST00000506336 297 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.33□□□□□ -2.2
CLDN9O95484 RNU6-856P-201ENST00000516959 98 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 AC011604.1-201ENST00000545978 196 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.33□□□□□ -2.2
CLDN9O95484 AL118558.2-201ENST00000556294 238 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.33□□□□□ -2.2
CLDN9O95484 AC006362.1-201ENST00000567392 174 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 MIR4753-201ENST00000585119 83 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 AL121757.2-201ENST00000611223 313 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms