Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.32□□□□□ -2.04
LMX1BO60663 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.31□□□□□ -2.04
LMX1BO60663 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1BO60663 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LMX1BO60663 RNU6-379P-201ENST00000363813 104 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 RNU6-1318P-201ENST00000365389 103 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 SNORA70B-201ENST00000384210 135 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 Y_RNA.504-201ENST00000384481 104 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 MIR628-201ENST00000385229 95 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
LMX1BO60663 RNU6-750P-201ENST00000390946 107 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 AL133475.1-201ENST00000404414 305 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 Y_RNA.618-201ENST00000410949 107 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 RNU6-1245P-201ENST00000411130 106 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 AC078809.1-201ENST00000427601 140 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 AC244670.1-201ENST00000436879 112 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1BO60663 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.31□□□□□ -2.04
LMX1BO60663 SNORD127-201ENST00000458892 86 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.31□□□□□ -2.04
LMX1BO60663 RNY3P15-201ENST00000516297 97 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 SNORD19.2-201ENST00000516978 73 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 RNU6-1271P-201ENST00000517049 105 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 RNU6-794P-201ENST00000517261 64 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1BO60663 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.31□□□□□ -2.04
LMX1BO60663 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1BO60663 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1BO60663 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.31□□□□□ -2.04
LMX1BO60663 AL355877.2-201ENST00000603670 358 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 AC090425.1-201ENST00000610007 140 ntBASIC2.31□□□□□ -2.04
LMX1BO60663 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.31□□□□□ -2.04
LMX1BO60663 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1BO60663 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1BO60663 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LMX1BO60663 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
LMX1BO60663 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
LMX1BO60663 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.3□□□□□ -2.04
LMX1BO60663 AC010889.1-201ENST00000566193 2666 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
LMX1BO60663 Y_RNA.40-201ENST00000362645 93 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 snoU2_19.2-201ENST00000363024 80 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 RNU6-529P-201ENST00000363383 104 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 U3.13-201ENST00000364804 214 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 Y_RNA.461-201ENST00000384263 103 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 RNU6-1026P-201ENST00000384465 108 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 MIR215-201ENST00000384858 110 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 MIR10B-201ENST00000385011 110 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 SNORD115-46-201ENST00000390982 71 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.3□□□□□ -2.04
LMX1BO60663 SDAD1P3-201ENST00000427380 333 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AC016700.2-201ENST00000446011 156 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 snoU13.6-201ENST00000458785 104 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.3□□□□□ -2.04
LMX1BO60663 AC008413.1-201ENST00000511864 177 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AC096725.1-201ENST00000514266 313 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 RNU5F-8P-201ENST00000515941 111 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 SNORA31.16-201ENST00000516773 139 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 MIR2355-201ENST00000517199 87 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.3□□□□□ -2.04
LMX1BO60663 AP003733.2-201ENST00000529409 171 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AL391813.1-201ENST00000603098 260 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AL359198.2-201ENST00000611836 194 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AL590808.1-201ENST00000618696 141 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 AC130454.1-201ENST00000622948 401 ntBASIC2.3□□□□□ -2.04
LMX1BO60663 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
LMX1BO60663 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LMX1BO60663 AC010615.1-201ENST00000594254 1764 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 SNORD115-8-201ENST00000363856 82 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RNA5SP68-201ENST00000363885 119 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 SNORD115-38-201ENST00000365037 82 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 CD24P4-201ENST00000382840 243 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 Y_RNA.447-201ENST00000384184 113 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RNU6-281P-201ENST00000384212 103 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 Y_RNA.562-201ENST00000384695 113 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 MIR153-2-201ENST00000385225 87 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RNU6-159P-201ENST00000391080 106 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.29□□□□□ -2.04
LMX1BO60663 CYCSP48-201ENST00000417124 323 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 PTGES3P4-201ENST00000426243 356 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 USP9YP16-201ENST00000430287 407 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RPS15AP7-201ENST00000439294 405 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RPL23AP58-201ENST00000440453 469 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 GPM6BP3-201ENST00000442797 145 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 AC096638.1-201ENST00000444678 216 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 USP9YP23-201ENST00000455085 407 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 SNRPGP7-201ENST00000469016 106 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 AC016632.1-201ENST00000503994 196 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RNU2-53P-201ENST00000516257 147 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 RNU6-58P-201ENST00000517143 103 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 AC022868.1-201ENST00000517767 391 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.29□□□□□ -2.04
LMX1BO60663 HSPE1P20-201ENST00000538133 289 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 UBL5P4-201ENST00000562584 236 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.29□□□□□ -2.04
LMX1BO60663 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.29□□□□□ -2.04
LMX1BO60663 AC240442.1-201ENST00000616055 283 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 AP001282.2-201ENST00000616149 309 ntBASIC2.29□□□□□ -2.04
LMX1BO60663 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
LMX1BO60663 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms