Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL096861.1-201ENST00000610899 123 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC009268.2-201ENST00000621925 457 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 RNU6-223P-201ENST00000362830 107 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 RNU6-432P-201ENST00000384196 109 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 RNA5SP323-201ENST00000391094 133 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 AL590084.2-201ENST00000401481 382 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 AC091860.1-201ENST00000505723 432 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 RNU6-138P-201ENST00000515952 107 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 SNORA31.10-201ENST00000516482 106 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 RNU6-885P-201ENST00000516607 104 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 MIR198-201ENST00000637333 62 ntBASIC-0.79□□□□□ -2.54
CCDC88BA6NC98 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 RNU6-72P-201ENST00000384285 79 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 RNA5SP300-201ENST00000391197 107 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 MIR892B-201ENST00000401279 77 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 RNU6-564P-201ENST00000410983 104 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 BX119904.4-201ENST00000424402 301 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 MTND1P9-201ENST00000453775 944 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AL122001.1-201ENST00000457027 370 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC021231.3-201ENST00000558497 370 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC104695.3-201ENST00000604052 296 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 BCRP9-201ENST00000605312 388 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 uc_338.16-201ENST00000621804 95 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 SNORD32B-201ENST00000364460 84 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 SNORD75.1-201ENST00000408373 60 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 RNU6-57P-201ENST00000411348 103 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 MTATP6P23-201ENST00000440153 476 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC092170.1-201ENST00000440211 356 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC016925.1-201ENST00000458303 298 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 snoU13.8-201ENST00000458890 104 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 snoU109.2-201ENST00000459316 135 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 RNU6-917P-201ENST00000516294 104 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC022868.1-201ENST00000517767 391 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC109446.1-201ENST00000566172 220 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 MIR548AO-201ENST00000579992 96 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AC008759.3-201ENST00000613300 508 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 AL159153.1-201ENST00000619688 317 ntBASIC-0.8□□□□□ -2.54
CCDC88BA6NC98 SNORA72.2-201ENST00000365028 127 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 SNORA2.2-201ENST00000365473 135 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 SNORA32.2-201ENST00000384049 122 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 SNORD116-20-201ENST00000384529 92 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 MIR520G-201ENST00000385064 90 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 MIR520H-201ENST00000385126 88 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 MIR16-1-201ENST00000385271 89 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 FCF1P10-201ENST00000407590 479 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 RNU6-284P-201ENST00000411105 106 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 RPL17P35-201ENST00000432217 549 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 RNU7-129P-201ENST00000516128 62 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 BNIP3P9-201ENST00000603714 553 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 SCARNA4-202ENST00000625402 129 ntBASIC-0.81□□□□□ -2.54
CCDC88BA6NC98 RNU6-619P-201ENST00000365146 108 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 TMSB4XP8-201ENST00000402089 135 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 AL133264.1-201ENST00000407157 562 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 TMSB4XP6-201ENST00000415187 135 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 MTCYBP5-201ENST00000423752 1135 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 TMSB4XP1-201ENST00000424567 135 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 ZNF886P-201ENST00000450781 723 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 RNU7-14P-201ENST00000459331 62 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 RNA5SP94-201ENST00000516917 108 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 MIR3192-201ENST00000584920 77 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 AL606834.3-201ENST00000602615 496 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 AL356596.1-201ENST00000624230 379 ntBASIC-0.82□□□□□ -2.54
CCDC88BA6NC98 SNORD115-24-201ENST00000363528 82 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 RNU4-84P-201ENST00000364200 139 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 RNU6-891P-201ENST00000384280 111 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 SNORA8.2-201ENST00000384372 139 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 ART2BP-201ENST00000453501 499 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 RPS29P15-201ENST00000458329 171 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 AC010531.2-201ENST00000465012 153 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 MIR5697-201ENST00000578045 78 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 AL513423.1-201ENST00000621695 132 ntBASIC-0.83□□□□□ -2.54
CCDC88BA6NC98 RNU6-1066P-201ENST00000363573 105 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 SNORD113.3-201ENST00000364630 78 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 MIR660-201ENST00000385235 97 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 MTND1P21-201ENST00000412991 285 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 MTCO2P5-201ENST00000422621 426 ntBASIC-0.84□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms