Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SNORA36B-201ENST00000410438 131 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 AL445584.1-201ENST00000431451 330 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 AC245047.4-201ENST00000433189 144 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 Y_RNA.757-201ENST00000578934 114 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 AP003357.1-201ENST00000604497 148 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 AL591424.2-201ENST00000617023 128 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 AC087190.4-201ENST00000574616 8334 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 MIR29B2-201ENST00000385055 81 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 RNA5SP496-201ENST00000391240 109 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 MIR300-201ENST00000401138 83 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 CYCSP19-201ENST00000411715 316 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 YME1L1P1-201ENST00000429435 297 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AL357134.1-201ENST00000445848 426 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 PDCD5P2-201ENST00000507570 312 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AC026726.1-201ENST00000512859 601 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AC090142.3-201ENST00000519012 385 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AC087499.8-201ENST00000578406 226 ntBASIC4.03□□□□□ -1.76
USP3Q9Y6I4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP3Q9Y6I4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.03□□□□□ -1.77
USP3Q9Y6I4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.03□□□□□ -1.77
USP3Q9Y6I4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 MAPK10-372ENST00000641954 3413 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 U8.7-201ENST00000364940 136 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 RNU6-915P-201ENST00000364943 103 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 RNA5SP239-201ENST00000410218 129 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 RN7SKP156-201ENST00000410308 342 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 RN7SKP202-201ENST00000410439 330 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AC010099.1-201ENST00000455434 375 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 RNA5SP164-201ENST00000516533 110 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AP000867.2-201ENST00000532468 320 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AC034105.4-201ENST00000568304 277 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AL670379.2-201ENST00000604983 252 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AC068647.2-201ENST00000637380 353 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP3Q9Y6I4 AP003122.5-201ENST00000527668 3766 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 ZNF702P-202ENST00000434269 1966 ntBASIC4.02□□□□□ -1.77
USP3Q9Y6I4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 AC000403.1-201ENST00000613696 3585 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 U8.11-201ENST00000384699 133 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 AL512604.1-201ENST00000404812 257 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 RNU6-588P-201ENST00000410281 105 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 RNU2-37P-201ENST00000410695 177 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 RNU2-55P-201ENST00000411146 174 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 EEF1B2P7-201ENST00000451177 676 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 U8.18-201ENST00000459285 133 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 CYCTP-201ENST00000504253 315 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 RNU6-561P-201ENST00000516222 102 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 AC127455.1-201ENST00000565496 145 ntBASIC4.01□□□□□ -1.77
USP3Q9Y6I4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.01□□□□□ -1.77
USP3Q9Y6I4 AL161912.2-201ENST00000565707 3007 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4□□□□□ -1.77
USP3Q9Y6I4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 RNU6-1144P-201ENST00000384247 104 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4□□□□□ -1.77
USP3Q9Y6I4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4□□□□□ -1.77
USP3Q9Y6I4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4□□□□□ -1.77
USP3Q9Y6I4 AL133162.1-201ENST00000463228 453 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 HMGN2P9-201ENST00000476875 229 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 AC117454.1-201ENST00000491120 168 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 KRTAP13-6P-201ENST00000508999 371 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 RNA5SP76-201ENST00000516277 87 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4□□□□□ -1.77
USP3Q9Y6I4 AL160236.1-201ENST00000556317 195 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms