Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Y_RNA.455-201ENST00000384230 98 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.526-201ENST00000384572 110 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.557-201ENST00000384680 107 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP213-201ENST00000391031 106 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 U6atac.2-201ENST00000408644 118 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP201-201ENST00000410316 124 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 AC104332.2-201ENST00000429959 156 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 MTND5P22-201ENST00000458380 195 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 snoU13.6-201ENST00000458785 104 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNU7-87P-201ENST00000459343 62 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP148-201ENST00000516527 94 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP54-201ENST00000516951 92 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-58P-201ENST00000517143 103 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 MTND5P16-201ENST00000460269 1703 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 AC026241.1-201ENST00000517873 2142 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.319-201ENST00000365138 92 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 SNORD21-201ENST00000383953 95 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.527-201ENST00000384573 102 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-823P-201ENST00000391042 103 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RPL21P75-201ENST00000396599 483 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RPL21P28-201ENST00000401418 483 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RN7SKP123-201ENST00000410732 291 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AL590556.1-201ENST00000423231 483 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 USP9YP16-201ENST00000430287 407 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 USP9YP23-201ENST00000455085 407 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RPL21P39-201ENST00000463605 483 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AC087190.1-201ENST00000484462 480 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AC107032.1-201ENST00000485945 480 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AC132942.1-201ENST00000486753 483 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AC093591.1-201ENST00000491435 481 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RPL21P16-201ENST00000495531 483 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 SNORA25.11-201ENST00000515935 105 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-1114P-201ENST00000516022 107 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 AL162730.1-201ENST00000605734 292 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 PCGEM1.1-201ENST00000613431 131 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 ZNF72P-201ENST00000425869 1908 ntBASIC2.97□□□□□ -1.93
PCDHA1Q9Y5I3 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
PCDHA1Q9Y5I3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.93
PCDHA1Q9Y5I3 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 Y_RNA.380-201ENST00000365663 111 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 Y_RNA.389-201ENST00000383924 113 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 RNU6-541P-201ENST00000384709 110 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 MIR628-201ENST00000385229 95 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 RNU6-159P-201ENST00000391080 106 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 SNORD88.1-201ENST00000408684 91 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 RNU6-101P-201ENST00000410323 104 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 EIF1P2-201ENST00000428233 350 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 RPL23AP58-201ENST00000440453 469 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AP000870.1-201ENST00000472927 406 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 SCARNA3-201ENST00000517097 143 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AP002770.2-201ENST00000543613 532 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AL442163.3-201ENST00000554110 156 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AC113195.1-201ENST00000579952 141 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 MIR4298-201ENST00000584380 73 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 RPL30P11-203ENST00000598995 310 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AL356575.1-201ENST00000603008 283 ntBASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
PCDHA1Q9Y5I3 AC069528.2-201ENST00000624849 1991 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 Y_RNA.27-201ENST00000362540 103 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 RNA5SP126-201ENST00000365092 109 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 MIR887-201ENST00000401258 79 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 RPS15AP7-201ENST00000439294 405 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 U8.22-201ENST00000459141 133 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 HMGN1P10-201ENST00000474557 553 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 SRIP1-201ENST00000489235 288 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 AC040926.1-201ENST00000530195 238 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 AC124312.5-201ENST00000604451 268 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PCDHA1Q9Y5I3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 RNU6-222P-201ENST00000362438 107 ntBASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 SNORA63.7-201ENST00000365579 123 ntBASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 Y_RNA.459-201ENST00000384251 102 ntBASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 RNU6-301P-201ENST00000384277 107 ntBASIC2.94□□□□□ -1.94
PCDHA1Q9Y5I3 RNU6-378P-201ENST00000384324 107 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms