Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AL603839.4-201ENST00000624658 1005 ntBASIC0.98□□□□□ -2.25
RHBDD3Q9Y3P4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
RHBDD3Q9Y3P4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 RNU6-545P-201ENST00000362681 104 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 snoU2-30.2-201ENST00000362805 70 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 RNU6-418P-201ENST00000384035 107 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 RNU6-606P-201ENST00000384721 111 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 RNU2-29P-201ENST00000410423 189 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 HMGN1P14-201ENST00000412459 517 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 ISCA1P6-201ENST00000427740 390 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 MTCO2P3-201ENST00000442543 421 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC091874.1-201ENST00000511402 339 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 CYCSP23-201ENST00000519781 313 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC090616.2-202ENST00000584248 222 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AL022345.2-201ENST00000606307 135 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 BX284668.6-201ENST00000606899 438 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC016597.2-201ENST00000613256 341 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AC005562.2-201ENST00000618264 111 ntBASIC0.97□□□□□ -2.25
RHBDD3Q9Y3P4 AL391987.6-201ENST00000305671 199 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 RNA5SP259-201ENST00000365541 109 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA18.2-201ENST00000383865 132 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 MIR1-2-201ENST00000384961 85 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 C1DP4-201ENST00000455429 424 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 SCARNA18-201ENST00000459004 134 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 RNU7-167P-201ENST00000459160 62 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 RNU7-34P-201ENST00000459394 64 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 HMGN1P12-201ENST00000499125 195 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 CENPUP1-201ENST00000526649 1202 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA59B-202ENST00000578183 701 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 AC004492.1-201ENST00000607036 742 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 AP001596.2-201ENST00000608410 312 ntBASIC0.96□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA36A-201ENST00000384221 132 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 RNU6-975P-201ENST00000384296 105 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 RPS26P42-201ENST00000413485 326 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 RPL39P38-201ENST00000467018 153 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 MIR4661-201ENST00000582720 75 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 MIR4769-201ENST00000584126 77 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 TCL6_2.1-201ENST00000615162 119 ntBASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.95□□□□□ -2.26
RHBDD3Q9Y3P4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 DYNLT3P2-201ENST00000442517 295 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 ZNF736P12Y-201ENST00000443152 1243 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 RPS29P28-201ENST00000446439 141 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 AL133217.1-201ENST00000450980 425 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 AGGF1P4-201ENST00000568249 801 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 MIR548AB-201ENST00000584917 84 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 MIR6078-201ENST00000611069 100 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 U2.17-201ENST00000611454 95 ntBASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.94□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA4.2-201ENST00000365313 147 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA22-201ENST00000383907 134 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA22C-201ENST00000384614 134 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AL031577.2-201ENST00000404133 280 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 RPL31P35-201ENST00000431058 377 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC091435.1-201ENST00000505442 584 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC105417.1-201ENST00000514691 285 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 RNA5SP458-201ENST00000516188 119 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AL391840.1-201ENST00000571144 367 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC136932.1-201ENST00000574771 208 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC245884.10-201ENST00000597355 337 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 Z84480.1-201ENST00000605131 311 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC104458.1-201ENST00000608243 463 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC022960.3-201ENST00000619794 441 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC009161.2-201ENST00000624626 138 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 AC009541.1-201ENST00000438279 2662 ntBASIC0.93□□□□□ -2.26
RHBDD3Q9Y3P4 SNORA40.3-201ENST00000390964 122 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 FGF7P8-201ENST00000402994 292 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 POLR2J4-204ENST00000418424 324 ntBASIC0.92□□□□□ -2.26
RHBDD3Q9Y3P4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms