Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS9D1Q9Y2B5 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS9D1Q9Y2B5 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS9D1Q9Y2B5 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
VPS9D1Q9Y2B5 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
VPS9D1Q9Y2B5 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 RNU1-72P-201ENST00000362976 153 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 RNU6-832P-201ENST00000363319 107 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 Y_RNA.454-201ENST00000384224 113 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 RNU6-975P-201ENST00000384296 105 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 MIR889-201ENST00000401280 79 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 EIF4A1P3-201ENST00000411521 244 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 RPL30P4-201ENST00000429309 333 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 SNRPGP13-201ENST00000442212 177 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 AC004486.1-201ENST00000546846 233 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 AC105129.1-201ENST00000560250 297 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 MIR3117-201ENST00000584034 78 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 AC011944.2-201ENST00000624440 683 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 Z73965.1-201ENST00000623412 2297 ntBASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS9D1Q9Y2B5 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 SNORA2.2-201ENST00000365473 135 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 RNA5SP87-201ENST00000384155 118 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 MIR124-3-201ENST00000384866 87 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 RPL21P65-201ENST00000406094 466 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AC006466.1-201ENST00000438721 289 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AC113410.1-201ENST00000505029 247 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AC096577.2-201ENST00000611455 153 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AC091905.2-201ENST00000623143 306 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 AC087190.4-201ENST00000574616 8334 ntBASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS9D1Q9Y2B5 MAPK10-304ENST00000641341 3984 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 RNU6-60P-201ENST00000364792 103 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 Y_RNA.620-201ENST00000411009 88 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 HSPE1P12-201ENST00000412576 301 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 AC009238.1-201ENST00000442165 424 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 AC009237.6-201ENST00000446969 424 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 RPS29P33-201ENST00000456717 146 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 SNORD19.2-201ENST00000516978 73 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 MIR548Z-201ENST00000584743 97 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 RNU1-30P-201ENST00000606575 163 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 MIR7703-201ENST00000620784 77 ntBASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS9D1Q9Y2B5 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 RNU1-22P-201ENST00000363334 158 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 SNORD32B-201ENST00000364460 84 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 MIR577-201ENST00000385196 96 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 SNORD96B-201ENST00000386148 79 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 AC016717.1-201ENST00000448918 286 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 AL162591.2-201ENST00000449634 317 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 RNU7-14P-201ENST00000459331 62 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 AC084357.1-201ENST00000473404 255 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 RNA5SP446-201ENST00000515955 82 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 RNU7-70P-201ENST00000516941 66 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 MIR4668-201ENST00000582284 70 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 RN7SL52P-201ENST00000584271 284 ntBASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
VPS9D1Q9Y2B5 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS9D1Q9Y2B5 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms