Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 AC026271.5-201ENST00000577873 130 ntBASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 AC022140.2-201ENST00000623500 188 ntBASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 AL359757.2-201ENST00000624309 274 ntBASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 SCARNA4-201ENST00000629045 128 ntBASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LIMA1Q9UHB6 MTND5P6-201ENST00000422338 1798 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 RNU6-593P-201ENST00000364716 112 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 RNA5SP160-201ENST00000364866 120 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 Y_RNA.535-201ENST00000384612 99 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 MIR634-201ENST00000385208 97 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 RNU6-174P-201ENST00000410406 106 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 RNA5SP338-201ENST00000410495 85 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 RPL37P10-201ENST00000412884 288 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AL021397.1-201ENST00000451806 248 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AL137159.1-201ENST00000452808 512 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 PRELID3BP1-201ENST00000457142 540 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AC025033.1-201ENST00000463883 194 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AC107032.1-201ENST00000485945 480 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 RPL23AP75-201ENST00000491601 451 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AL031274.2-201ENST00000599419 203 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AC018462.2-201ENST00000605375 395 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AC016727.1-205ENST00000605437 569 ntBASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.34□□□□□ -2.03
LIMA1Q9UHB6 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
LIMA1Q9UHB6 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
LIMA1Q9UHB6 AC006026.1-201ENST00000444025 1803 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.67-201ENST00000362870 100 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 RNU6-234P-201ENST00000365229 104 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 RNU6-842P-201ENST00000384269 107 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 SNORD116-29-201ENST00000384516 83 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 RNU6-601P-201ENST00000384540 107 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 NCOR1P3-201ENST00000420479 303 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 OR2AQ1P-201ENST00000451972 200 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 RNU7-193P-201ENST00000516723 65 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 AC090517.1-201ENST00000569307 266 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 MIR3162-201ENST00000581818 82 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 MIR4273-201ENST00000582824 84 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 AC113139.1-201ENST00000605049 239 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 MIR6132-201ENST00000622083 109 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 MTND4P29-201ENST00000503122 1372 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 AC131280.1-202ENST00000624067 4211 ntBASIC2.33□□□□□ -2.04
LIMA1Q9UHB6 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 RNU6-1159P-201ENST00000362933 107 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 RNU6-694P-201ENST00000364071 147 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.813-201ENST00000364639 102 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 SNORA51.11-201ENST00000384442 131 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 MIR23A-201ENST00000385245 73 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.632-201ENST00000459189 102 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AC026782.1-201ENST00000512952 449 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 RNU6-991P-201ENST00000516168 107 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.675-201ENST00000516389 149 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AC009127.3-201ENST00000570531 403 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 MIR5696-201ENST00000578474 85 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 AC137590.2-201ENST00000619709 240 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.32□□□□□ -2.04
LIMA1Q9UHB6 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 RNU4-9P-201ENST00000364951 139 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.473-201ENST00000384333 102 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.510-201ENST00000384511 114 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.533-201ENST00000384596 114 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AL357139.1-201ENST00000407792 426 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 MIR1262-201ENST00000408276 93 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.594-201ENST00000410373 140 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 SRIP3-201ENST00000413200 219 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 SNRPGP18-201ENST00000553000 214 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 FRG2DP-202ENST00000566967 323 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AC011494.1-201ENST00000596454 237 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AL158827.2-201ENST00000602494 330 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AC098657.3-201ENST00000620434 263 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms