Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL160236.1-201ENST00000556317 195 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 LINC00901.1-201ENST00000617252 152 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 MIR6500-201ENST00000622700 86 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC007256.1-201ENST00000392253 2765 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNA5SP124-201ENST00000362739 110 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNU4-41P-201ENST00000364426 143 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 SNORA73.2-201ENST00000364946 201 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNU6-234P-201ENST00000365229 104 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNU1-63P-201ENST00000383902 164 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 SNRPGP8-201ENST00000454064 226 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC083906.5-201ENST00000503722 328 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNA5SP446-201ENST00000515955 82 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNA5SP20-201ENST00000515976 84 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 RNU6-197P-201ENST00000516680 100 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 Y_RNA.712-201ENST00000517011 92 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC093331.1-201ENST00000521474 169 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 SNORA51-201ENST00000606420 132 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC091905.2-201ENST00000623143 306 ntBASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
LIMD1Q9UGP4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 SNORA25.7-201ENST00000364375 127 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 Y_RNA.587-201ENST00000391210 103 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 AC008134.1-201ENST00000420943 193 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 AL031183.1-201ENST00000457667 207 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 FCF1P8-201ENST00000510322 597 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 RNU6-948P-201ENST00000516374 107 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 AC109329.2-201ENST00000519658 482 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 AC093732.2-201ENST00000607950 274 ntBASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.37□□□□□ -1.71
LIMD1Q9UGP4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 SNORD31B-201ENST00000364977 69 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 Y_RNA.432-201ENST00000384087 111 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 RNU6-57P-201ENST00000411348 103 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 EEF1B2P7-201ENST00000451177 676 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 RNA5SP76-201ENST00000516277 87 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 AC100770.1-201ENST00000532310 322 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 AC120024.3-201ENST00000603167 156 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 AL160290.3-201ENST00000604869 165 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 Z82209.1-201ENST00000422141 2135 ntBASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
LIMD1Q9UGP4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 AL356292.1-201ENST00000283110 373 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 RNA5SP119-201ENST00000362715 117 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 RNU4-13P-201ENST00000364019 141 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 RNU6-476P-201ENST00000384726 107 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 MIR708-201ENST00000390708 88 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 AL353705.1-201ENST00000433468 480 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 RPS26P28-201ENST00000470806 348 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 SCARNA13-201ENST00000516672 275 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 MIR2681-201ENST00000581814 105 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 5S_rRNA.13-201ENST00000622298 123 ntBASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.35□□□□□ -1.71
LIMD1Q9UGP4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
LIMD1Q9UGP4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms