Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SNORD113-7-201ENST00000363762 77 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RNA5SP493-201ENST00000364115 91 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 SNORD48-201ENST00000364953 64 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RNU6-933P-201ENST00000384424 107 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RNU6-1093P-201ENST00000391194 107 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 SNORD115-47-201ENST00000391226 86 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RNU2-40P-201ENST00000410833 196 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RNA5SP501-201ENST00000410990 112 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 VN1R36P-201ENST00000414936 291 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 AC244636.1-201ENST00000421152 228 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 snoU13.6-201ENST00000458785 104 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RNU7-187P-201ENST00000458985 68 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 RN7SL274P-201ENST00000492268 272 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 DEFB122-202ENST00000569013 197 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 MIR4255-201ENST00000579351 72 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 MIR4448-201ENST00000584360 86 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 AC098657.3-201ENST00000620434 263 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 AC139792.2-201ENST00000624218 587 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.74□□□□□ -2.13
LHX3Q9UBR4 LINC02555-201ENST00000563933 1951 ntBASIC1.74□□□□□ -2.13
LHX3Q9UBR4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
LHX3Q9UBR4 SNORD114-6-201ENST00000364393 72 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.295-201ENST00000364918 102 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 RNU6-877P-201ENST00000383868 107 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 RNU6-128P-201ENST00000383976 107 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 SNORA29-201ENST00000384183 140 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
LHX3Q9UBR4 MIR676-201ENST00000390702 67 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AL035666.1-201ENST00000446195 348 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 RNU7-14P-201ENST00000459331 62 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 RNU7-66P-201ENST00000459469 62 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC092989.1-201ENST00000481235 277 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.73□□□□□ -2.13
LHX3Q9UBR4 ATP5EP1-201ENST00000510257 156 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 RNU6-1098P-201ENST00000516772 96 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 RNU6-548P-201ENST00000517083 115 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.73□□□□□ -2.13
LHX3Q9UBR4 MRPS36P4-201ENST00000534436 298 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC104581.2-201ENST00000572227 430 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 CPDP1-201ENST00000579660 283 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC146944.4-201ENST00000602697 718 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.73□□□□□ -2.13
LHX3Q9UBR4 MIR3976-201ENST00000606807 139 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC005296.1-201ENST00000616145 209 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC091932.3-201ENST00000624223 323 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 AC090617.10-201ENST00000624308 134 ntBASIC1.73□□□□□ -2.13
LHX3Q9UBR4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 RNU6-1286P-201ENST00000383871 107 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.453-201ENST00000384223 109 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AL356432.1-201ENST00000405809 419 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 EIF4EP2-201ENST00000422816 654 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AL590632.1-201ENST00000424289 371 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 USP9YP28-201ENST00000435142 589 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 MTCO3P18-201ENST00000440206 761 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 SNRPEP8-201ENST00000442866 260 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 RNA5SP57-201ENST00000459463 123 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 TOMM22P6-201ENST00000465035 409 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 RPS23P5-201ENST00000495419 428 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 RNU6-718P-201ENST00000516166 105 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 SNORA25.15-201ENST00000516487 89 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AP005639.2-201ENST00000527592 928 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 ANP32BP3-201ENST00000559213 706 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC015712.3-201ENST00000559380 164 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 MIR3169-201ENST00000578032 83 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 MIR3618-201ENST00000580330 88 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 MIR3683-201ENST00000580847 82 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 FGF7P1-201ENST00000582820 288 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 MIR8076-201ENST00000611401 83 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AL590240.4-201ENST00000616908 390 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 U4.5-201ENST00000617137 123 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 uc_338.20-201ENST00000621563 178 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC100810.6-201ENST00000638068 285 ntBASIC1.72□□□□□ -2.13
LHX3Q9UBR4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.151-201ENST00000363566 112 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNU6-534P-201ENST00000364877 106 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 SNORA32.2-201ENST00000384049 122 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNU6-968P-201ENST00000384076 107 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNU6-1026P-201ENST00000384465 108 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.530-201ENST00000384587 101 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNA5SP494-201ENST00000410653 129 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 SNRPEP10-201ENST00000420249 274 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNU1-131P-201ENST00000458943 161 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms