Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.402-201ENST00000383972 102 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 RNU6-1093P-201ENST00000391194 107 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AL357139.1-201ENST00000407792 426 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 MIR1323-201ENST00000408090 73 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AC244636.1-201ENST00000421152 228 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 UBE2V1P4-201ENST00000425374 344 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 USP9YP28-201ENST00000435142 589 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 NDUFA5P4-201ENST00000436704 385 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 snoU13.23-201ENST00000458863 104 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 ATP5EP1-201ENST00000510257 156 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AC005741.1-201ENST00000511094 432 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AC109635.3-201ENST00000529536 185 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 TPRKBP2-201ENST00000565969 475 ntBASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS54Q9P1Q0 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 RNY4P14-201ENST00000363656 96 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 SNORA29-201ENST00000384183 140 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 SNORA8-201ENST00000384574 139 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 MIR521-1-201ENST00000384902 87 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP212-201ENST00000391223 107 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 VN1R36P-201ENST00000414936 291 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 MTCO1P21-201ENST00000416634 589 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 SNRPEP8-201ENST00000442866 260 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AC007547.1-201ENST00000462177 490 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 RNU6-1098P-201ENST00000516772 96 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AC015712.3-201ENST00000559380 164 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 CPDP1-201ENST00000579660 283 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.8□□□□□ -2.12
VPS54Q9P1Q0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.9-201ENST00000362354 101 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 SNORD113-7-201ENST00000363762 77 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP493-201ENST00000364115 91 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 RNU4-12P-201ENST00000365233 139 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP501-201ENST00000410990 112 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 RNU7-187P-201ENST00000458985 68 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 RNA5SP57-201ENST00000459463 123 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 MTCO1P29-201ENST00000496868 288 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AC090517.1-201ENST00000569307 266 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 CYP2C61P-201ENST00000604072 290 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 BX248123.2-201ENST00000606318 124 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 MIR3976-201ENST00000606807 139 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AC064807.4-201ENST00000607201 407 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AC005520.5-201ENST00000613926 164 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 AL590240.4-201ENST00000616908 390 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 U1.36-201ENST00000620684 176 ntBASIC1.79□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.151-201ENST00000363566 112 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.332-201ENST00000365271 113 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.450-201ENST00000384198 113 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 RNU6-1215P-201ENST00000384441 102 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 SNORA12.2-201ENST00000391040 156 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AL590632.1-201ENST00000424289 371 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 FTH1P25-201ENST00000447665 469 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 RNU7-14P-201ENST00000459331 62 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 TOMM22P6-201ENST00000465035 409 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC108210.2-201ENST00000503681 201 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC114801.2-201ENST00000503825 781 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC096745.1-201ENST00000509945 370 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 Y_RNA.655-201ENST00000515919 96 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 RNU5F-4P-201ENST00000516581 114 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 MIR3672-201ENST00000584290 82 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC010928.2-201ENST00000588017 287 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC009994.1-201ENST00000606889 253 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC130454.1-201ENST00000622948 401 ntBASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS54Q9P1Q0 AC245060.5-201ENST00000610778 3293 ntBASIC1.78□□□□□ -2.13
VPS54Q9P1Q0 RNU5B-2P-201ENST00000363036 113 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 RNU6-23P-201ENST00000363283 107 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 RNU6-438P-201ENST00000365561 103 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 RNU6-160P-201ENST00000384591 107 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 SNORA17.3-201ENST00000391159 129 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 RNU7-66P-201ENST00000459469 62 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 FAM206BP-201ENST00000510179 541 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms