Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM56Q9BRZ2 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM56Q9BRZ2 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
TRIM56Q9BRZ2 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM56Q9BRZ2 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM56Q9BRZ2 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 Y_RNA.40-201ENST00000362645 93 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 RNU6-103P-201ENST00000363686 107 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 U1.1-201ENST00000384101 164 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 MIR186-201ENST00000384988 86 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AL133475.1-201ENST00000404414 305 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 EBAG9P1-201ENST00000418955 543 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 snoU13.22-201ENST00000459428 104 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AC091179.1-201ENST00000461606 579 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AC136628.3-201ENST00000521868 290 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 AC068205.3-201ENST00000636385 468 ntBASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
TRIM56Q9BRZ2 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 MIR767-201ENST00000390228 109 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 RNU6-239P-201ENST00000390990 99 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 RNU6-381P-201ENST00000391259 108 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AL357075.1-201ENST00000404107 726 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 TOMM22P2-201ENST00000430735 237 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 SNORD116-25-201ENST00000516517 92 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AC008011.1-201ENST00000545989 227 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 AL137843.1-201ENST00000605078 385 ntBASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM56Q9BRZ2 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RNU4-15P-201ENST00000362613 141 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RNU6-151P-201ENST00000364158 107 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RNU6-454P-201ENST00000364292 107 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 Y_RNA.287-201ENST00000364853 94 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RNA5SP97-201ENST00000365006 84 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AC027124.2-201ENST00000428249 105 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 CR769767.1-201ENST00000436337 346 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RPS29P7-201ENST00000439662 171 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AL358232.1-201ENST00000448030 501 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RPL23AP70-201ENST00000483361 460 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RPL36AP48-201ENST00000485521 314 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RN7SKP83-201ENST00000516512 178 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AC013791.1-201ENST00000616619 62 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 AC018692.3-201ENST00000623929 123 ntBASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
TRIM56Q9BRZ2 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 RNU6-1290P-201ENST00000362957 109 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 SNORD6-201ENST00000365444 73 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 SNORA70.4-201ENST00000365509 134 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 Y_RNA.586-201ENST00000391146 98 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AL031003.1-201ENST00000404229 172 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AC004386.2-201ENST00000441858 148 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AL031183.1-201ENST00000457667 207 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 U8.19-201ENST00000459095 133 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AC006445.1-201ENST00000491925 405 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 MIR5006-201ENST00000583027 110 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 RNU1-30P-201ENST00000606575 163 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AP003122.5-201ENST00000527668 3766 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AC069528.2-201ENST00000624849 1991 ntBASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.78□□□□□ -1.8
TRIM56Q9BRZ2 AC010329.5-201ENST00000623497 2174 ntBASIC3.78□□□□□ -1.81
TRIM56Q9BRZ2 TNPO1P3-201ENST00000436471 2662 ntBASIC3.77□□□□□ -1.81
TRIM56Q9BRZ2 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TRIM56Q9BRZ2 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TRIM56Q9BRZ2 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms