Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNRPGP7-201ENST00000469016 106 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RPL23AP42-201ENST00000471152 471 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC021146.2-201ENST00000504736 556 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 FGF7P4-201ENST00000509595 295 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC026782.1-201ENST00000512952 449 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 RNU6-273P-201ENST00000516937 96 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC034114.1-201ENST00000520293 285 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 PRELID2P1-201ENST00000552837 301 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 MIR548S-201ENST00000581352 82 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC018462.2-201ENST00000605375 395 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC009994.1-201ENST00000606889 253 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 MIR6128-201ENST00000615528 109 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 AC090517.3-201ENST00000625170 141 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 TPTEP1-208ENST00000636884 213 ntBASIC2.08□□□□□ -2.08
CCDC3Q9BQI4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC233981.2-201ENST00000611524 1614 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AL356292.1-201ENST00000283110 373 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 RNU6-137P-201ENST00000363680 108 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.184-201ENST00000363884 108 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 RNA5SP99-201ENST00000364020 114 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 RNU6-944P-201ENST00000364023 107 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 SNORA46.1-201ENST00000391069 153 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AL356432.1-201ENST00000405809 419 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 RPL37P10-201ENST00000412884 288 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 RPS3AP52-201ENST00000435639 297 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC007215.1-201ENST00000464893 276 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 RPL23AP75-201ENST00000491601 451 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC103851.1-201ENST00000506833 274 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC092794.2-201ENST00000620933 563 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC012640.5-201ENST00000623897 319 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 MTND5P9-201ENST00000503854 1755 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 AC007336.1-201ENST00000576365 3828 ntBASIC2.07□□□□□ -2.08
CCDC3Q9BQI4 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 SNORD115-8-201ENST00000363856 82 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 RNU4-9P-201ENST00000364951 139 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 SNORD115-38-201ENST00000365037 82 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 SNORA6-201ENST00000384033 151 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 SNORA36A-201ENST00000384221 132 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 RNY3P14-201ENST00000384309 102 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 SNORA48.3-201ENST00000391081 134 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 MIR1294-201ENST00000408503 142 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 RNU2-32P-201ENST00000411193 191 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 MTND5P20-201ENST00000448677 143 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 OR2AQ1P-201ENST00000451972 200 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 RNA5SP137-201ENST00000516833 135 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 MRPS36P4-201ENST00000534436 298 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 AC011494.1-201ENST00000596454 237 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 AL137847.3-201ENST00000611521 109 ntBASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC3Q9BQI4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RNU6-1159P-201ENST00000362933 107 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.142-201ENST00000363491 102 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RNU6-26P-201ENST00000383985 107 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RNU6-842P-201ENST00000384269 107 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.474-201ENST00000384341 102 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RNA5SP494-201ENST00000410653 129 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AC243428.1-201ENST00000421099 264 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 USP9YP30-201ENST00000430729 455 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 MTATP6P23-201ENST00000440153 476 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AF186996.7-201ENST00000492781 209 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RNU7-193P-201ENST00000516723 65 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RNU6-548P-201ENST00000517083 115 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RPS3AP23-202ENST00000574601 686 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AC005730.3-201ENST00000583067 366 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 SNRPGP17-201ENST00000603780 214 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 RMST_6.1-201ENST00000611980 203 ntBASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC3Q9BQI4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 RNU6-595P-201ENST00000363944 107 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 RNU6-378P-201ENST00000384324 107 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 RNU6-306P-201ENST00000384617 107 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AL355497.1-201ENST00000406262 551 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 ZNF299P-201ENST00000406845 1804 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 SNORD23.1-201ENST00000408212 104 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 SRIP3-201ENST00000413200 219 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AL358453.1-201ENST00000422522 250 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms