Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORA62.6-201ENST00000606322 83 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 U2.21-201ENST00000637295 81 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 AC092268.1-201ENST00000342691 405 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 RNU6-245P-201ENST00000384020 107 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 SNORD116-21-201ENST00000384507 92 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 RNU6-140P-201ENST00000384566 108 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 YPEL5P1-201ENST00000419731 367 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 RNU7-141P-201ENST00000459304 62 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 RAC1P2-201ENST00000511164 579 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 RNU6-107P-201ENST00000516643 102 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 IGKV2D-19-201ENST00000523346 262 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 CR383656.8-201ENST00000549046 145 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 AL670379.3-201ENST00000605040 251 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 AC019176.2-201ENST00000611579 315 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRERF1Q96PN7 AL136964.1-201ENST00000622038 2990 ntBASIC4.32□□□□□ -1.72
TRERF1Q96PN7 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 CENPCP1-201ENST00000533085 2578 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RNU6-1205P-201ENST00000363625 106 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.280-201ENST00000364765 112 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RNU6-1264P-201ENST00000383891 107 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RNU6-1228P-201ENST00000391014 107 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RPS29P4-201ENST00000414733 161 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RN7SL93P-201ENST00000463035 293 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 AC026726.1-201ENST00000512859 601 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RN7SKP18-201ENST00000516005 275 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 AC012314.7-201ENST00000619693 93 ntBASIC4.31□□□□□ -1.72
TRERF1Q96PN7 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.31□□□□□ -1.72
TRERF1Q96PN7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU1-62P-201ENST00000362599 164 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU6-778P-201ENST00000363269 103 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNA5SP387-201ENST00000364226 106 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU6-728P-201ENST00000365375 104 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU6-32P-201ENST00000383948 107 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU6-13P-201ENST00000384248 107 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU6-12P-201ENST00000384604 107 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RNU6-41P-201ENST00000384741 107 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AL591034.1-201ENST00000407447 340 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 MIR1290-201ENST00000408735 78 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 VDAC1P3-201ENST00000434069 851 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RPL39P29-201ENST00000447779 157 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 RPL31P41-201ENST00000477967 372 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.757-201ENST00000578934 114 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 MIR3922-201ENST00000585192 84 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AL031274.2-201ENST00000599419 203 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 AC120024.3-201ENST00000603167 156 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.3□□□□□ -1.72
TRERF1Q96PN7 Z82209.1-201ENST00000422141 2135 ntBASIC4.3□□□□□ -1.72
TRERF1Q96PN7 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 UBE3AP2-201ENST00000429033 2259 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.368-201ENST00000365547 113 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 RNU6-1197P-201ENST00000391183 107 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 RNU6-855P-201ENST00000410395 104 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 RNU6-383P-201ENST00000410864 94 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 AC019205.3-201ENST00000424573 156 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 AL590383.1-201ENST00000428602 75 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 NDUFB4P6-201ENST00000436819 366 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 AL158147.1-201ENST00000443970 75 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 AC125238.1-201ENST00000448842 249 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 RNA5SP208-201ENST00000516156 78 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 RNU6-1061P-201ENST00000516530 99 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 MIR3186-201ENST00000577404 85 ntBASIC4.29□□□□□ -1.72
TRERF1Q96PN7 MIR6134-201ENST00000617606 109 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms