Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC015540.1-201ENST00000615828 501 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC073534.2-201ENST00000620377 381 ntBASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC54Q8NEL0 AL356292.1-201ENST00000283110 373 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 SNORD50.1-201ENST00000362987 71 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.123-201ENST00000363338 102 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 SNORA18.2-201ENST00000383865 132 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 SNORA40.18-201ENST00000391200 128 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 MIR208B-201ENST00000401172 77 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AL590002.1-201ENST00000406554 418 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 RN7SKP51-201ENST00000410781 304 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 RN7SKP101-201ENST00000411376 320 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AL590556.1-201ENST00000423231 483 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC139712.2-201ENST00000424302 339 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 UBE2V1P4-201ENST00000425374 344 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 MTCO3P46-201ENST00000425787 232 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 MTCO3P18-201ENST00000440206 761 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC016925.1-201ENST00000458303 298 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 RPS29P25-201ENST00000481709 171 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 SUB1P4-201ENST00000566062 339 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 MIR3672-201ENST00000584290 82 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC010900.2-201ENST00000604508 210 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 MIR3976-201ENST00000606807 139 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AC097065.2-201ENST00000608159 533 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 AL133215.3-201ENST00000609801 448 ntBASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
CCDC54Q8NEL0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.151-201ENST00000363566 112 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.373-201ENST00000365600 103 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RNU6-1286P-201ENST00000383871 107 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 SNORA32.2-201ENST00000384049 122 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RNU6-439P-201ENST00000384188 106 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RNU6-95P-201ENST00000384697 107 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 U8.13-201ENST00000390842 128 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AL357139.1-201ENST00000407792 426 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RNU6-955P-201ENST00000410497 104 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC079354.2-201ENST00000453523 154 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 UBL5P3-201ENST00000475112 231 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC023790.1-201ENST00000482174 347 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RPL23AP63-201ENST00000498752 471 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 FAM206BP-201ENST00000510179 541 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RNU6-314P-201ENST00000516574 104 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC090517.1-201ENST00000569307 266 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 MIR3942-201ENST00000585264 109 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC016925.2-201ENST00000605108 242 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AL022345.1-201ENST00000607292 135 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC009318.2-201ENST00000610917 651 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 DISC2.1-201ENST00000612827 205 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AL138726.1-201ENST00000614873 333 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC090617.10-201ENST00000624308 134 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 AC068205.3-201ENST00000636385 468 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 MTND5P9-201ENST00000503854 1755 ntBASIC1.39□□□□□ -2.19
CCDC54Q8NEL0 RNU6-545P-201ENST00000362681 104 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 RNU6-23P-201ENST00000363283 107 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.135-201ENST00000363439 95 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 RNU6-160P-201ENST00000384591 107 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 RNU6-1093P-201ENST00000391194 107 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AL513185.2-201ENST00000425543 193 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AL357134.1-201ENST00000445848 426 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 RNU7-14P-201ENST00000459331 62 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AC132942.1-201ENST00000486753 483 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 MTCYBP18-201ENST00000501056 747 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 AC091435.1-201ENST00000505442 584 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 SNORA44.1-201ENST00000517031 108 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 ZNF519P2-201ENST00000557032 169 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 MTND5P10-201ENST00000603719 1809 ntBASIC1.38□□□□□ -2.19
CCDC54Q8NEL0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 SNORD31B-201ENST00000364977 69 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 U8.10-201ENST00000384260 133 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 RNU6-784P-201ENST00000384330 106 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 MIR517C-201ENST00000385103 95 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 AL117342.1-201ENST00000404861 406 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 MTCO1P21-201ENST00000416634 589 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 241.7 ms