Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AC087683.1-201ENST00000591187 441 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 ELL2P3-201ENST00000457883 1602 ntBASIC1.65□□□□□ -2.15
HDDC3Q8N4P3 RNU6-227P-201ENST00000362865 103 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 Y_RNA.67-201ENST00000362870 100 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 AL606489.2-201ENST00000433886 234 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 U8.21-201ENST00000459536 136 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 AC098862.1-201ENST00000504991 413 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 RNU1-92P-201ENST00000517017 135 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 AC087854.1-201ENST00000519706 414 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 RNU6-323P-201ENST00000521915 107 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 MIR6504-201ENST00000613520 61 ntBASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HDDC3Q8N4P3 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 RNU1-42P-201ENST00000364033 160 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 RNU6-392P-201ENST00000364926 101 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 SNORD48-201ENST00000364953 64 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 SNORA18.2-201ENST00000383865 132 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 MIR520A-201ENST00000384862 85 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 SNORA67.6-201ENST00000391093 99 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 RNU4-55P-201ENST00000410731 137 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 MTCO1P44-201ENST00000441935 243 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 snoU13.6-201ENST00000458785 104 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 RNU1-98P-201ENST00000458992 160 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 AC010531.2-201ENST00000465012 153 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 AC092747.3-201ENST00000603769 301 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.63□□□□□ -2.15
HDDC3Q8N4P3 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 RNU6-877P-201ENST00000383868 107 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 MIR1276-201ENST00000408707 83 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AL353193.1-201ENST00000421444 268 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 MTND3P9-201ENST00000429526 346 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 UBE2V1P8-201ENST00000437166 265 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AL357134.1-201ENST00000445848 426 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 HSPE1P24-201ENST00000450782 238 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 MTCO3P38-201ENST00000468910 766 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 RNA5SP401-201ENST00000515920 127 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AC016256.1-201ENST00000547971 354 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AC025423.5-201ENST00000550230 219 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 MIR4422-201ENST00000581938 83 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 MIR4424-201ENST00000585257 86 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AC119751.7-201ENST00000600494 245 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 AL357078.3-201ENST00000607528 618 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 MIR3974-201ENST00000637126 96 ntBASIC1.62□□□□□ -2.15
HDDC3Q8N4P3 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 RNU6-862P-201ENST00000362804 105 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 SNORA7.1-201ENST00000363750 139 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 RNU6-296P-201ENST00000384608 107 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 Y_RNA.553-201ENST00000384670 102 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 RN7SKP101-201ENST00000411376 320 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC114801.2-201ENST00000503825 781 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC108078.1-201ENST00000508073 725 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC025465.4-201ENST00000513422 638 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 SNORA40.12-201ENST00000516329 111 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 RNU6-1038P-201ENST00000516516 104 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC104576.1-201ENST00000524225 88 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AP001485.1-201ENST00000604799 199 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AL157834.3-201ENST00000615543 103 ntBASIC1.61□□□□□ -2.15
HDDC3Q8N4P3 AC010615.1-201ENST00000594254 1764 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 RNU6-545P-201ENST00000362681 104 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 RNU6-562P-201ENST00000362731 107 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 RNU6-82P-201ENST00000363970 107 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 Y_RNA.191-201ENST00000363972 113 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 RNU1-96P-201ENST00000364163 162 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 RNU6-60P-201ENST00000364792 103 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 RNU4-66P-201ENST00000365199 138 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MIR300-201ENST00000401138 83 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MTCO1P21-201ENST00000416634 589 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 ARL5AP1-201ENST00000418991 388 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 FTH1P12-201ENST00000432137 551 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 HSPE1P9-201ENST00000440046 311 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MTCO1P19-201ENST00000443487 500 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 snoU13.30-201ENST00000458951 104 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AC091435.1-201ENST00000505442 584 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AC010424.1-201ENST00000506336 297 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 CENPUP1-201ENST00000526649 1202 ntBASIC1.6□□□□□ -2.15
HDDC3Q8N4P3 AP005597.4-201ENST00000526762 229 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms